Cloudy
Spectral Synthesis Code for Astrophysics
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init.h File Reference
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Functions

void InitCoreload (void)
 
void InitDefaultsPreparse (void)
 
void InitCoreloadPostparse (void)
 
void InitSimPostparse (void)
 
void zero (void)
 

Function Documentation

void InitCoreload ( void  )

one time initialization of core load, called from cdDrive, this sets minimum set of values needed for the code to start - called after input lines have been read in and checked for VARY or GRID - so known whether single or multiple sims will be run

References DEBUG_ENTRY, diatoms_init(), iso_init(), and SaveFilesInit().

Referenced by cdDrive().

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void InitCoreloadPostparse ( void  )

initialization after parser, called one time per core load create space needed for code to operate

References ASSERT, DEBUG_ENTRY, dense, qList::init(), ipH_LIKE, iso_ctrl, iso_sp, iso_update_num_levels(), t_isoCTRL::lgDielRecom, t_dense::lgElmtOn, LIMELM, makeChemical(), NISO, t_isoCTRL::nLyman, t_isoCTRL::nLyman_alloc, t_isoCTRL::nLyman_max, t_iso_sp::numLevels_max, and t_iso_sp::st.

Referenced by cloudy().

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void InitDefaultsPreparse ( void  )

initialize values that are changed in the parser. Called just before parser, will be called one time per core load

Set the default collision strength for dBase transitions when there is no radiative data

References abund, t_dense::AbundanceLimit, Wind::AccelAver, Wind::AccelCont, Wind::AccelElectron, Wind::AccelGravity, Wind::AccelLine, Wind::AccelMax, Wind::AccelTotalOutward, Wind::acldr, atmdat, EmissionProxy::Aul(), t_StopCalc::AV_extended, t_StopCalc::AV_point, t_prt::blend, t_atmdat::chCloudyChiantiFile, t_optimize::chColDen_label, t_dense::chDenseLaw, t_rfield::chDffTrns, t_save::chHashString, t_atmdat::chLamdaFile, t_optimize::chOptRtn, t_StopCalc::chSpeciesColumn, t_save::chSpeciesDominantRates, t_atmdat::chStoutFile, t_optimize::chTempLab, t_optimize::chTempWeight, t_atmdat::CIRCData, DepthTable::clear(), GrainVar::clear(), t_StopCalc::col_H0_ov_Tspin, t_StopCalc::col_h2, t_StopCalc::col_h2_nut, t_StopCalc::col_monoxco, t_StopCalc::col_species, t_optimize::ColDen_error, t_optimize::ColDen_Obs, t_atmdat::collstrDefault, t_StopCalc::colnut, t_StopCalc::colpls, COLUMN_INIT, Wind::comass, t_thermal::ConstGrainTemp, t_thermal::ConstTemp, t_optimize::ContEner, t_optimize::ContIndex, continuum, t_optimize::ContNFnu, t_optimize::ContNFnuErr, t_geometry::covaper, cpu, t_hextra::cr_energydensity, t_hextra::crpowr, t_hextra::crtemp, t_hextra::cryden, t_hextra::cryden_ov_background, EmissionProxy::damp(), EmissionProxy::dampXvel(), DEBUG_ENTRY, dense, t_geometry::DirectionalCosin, Wind::DiskRadius, t_dense::DLW, t_ionbal::DR_mean_scale, t_radius::drChange, DummyEmis, Wind::dvdr, dynamics, t_dense::EdenExtra, t_dense::EdenFraction, t_dense::EdenSet, t_opac::eeFreeFreeTemp, t_mesh::egamry(), Wind::emdot, t_save::emisfreq, EmLineZero(), t_optimize::errorwave, t_rfield::ExtinguishColumnDensity, t_rfield::ExtinguishLeakage, t_rfield::ExtinguishLowEnergyLimit, t_dense::flcPhase, t_dense::flong, t_rfield::FluxFaint, Wind::fmul, Illuminate::FORWARD, t_fudgec::fudgea, fudgec, geometry, EmissionProxy::gf(), t_radius::glbdst, t_radius::glbrad, grid, gv, hcmap, t_StopCalc::HColStop, hextra, t_atmdat::HYBRID, t_cpu::i(), t_rfield::Illumination, isotope::init(), t_optimize::ion_ColDen, ionbal, t_optimize::ionTemp, ipARGON, ipCARBON, t_save::ipEmisFreq, EmissionProxy::ipFine(), ipH_LIKE, ipHELIUM, ipHYDROGEN, ipIRON, ipMAGNESIUM, ipNEON, ipNITROGEN, t_optimize::ipobs, ipOXYGEN, ipSILICON, ipSULPHUR, t_StopCalc::iptnu, EmissionProxy::iRedisFun(), t_abund::IsoAbn, t_dynamics::lg_coronal_time_init, t_hextra::lg_CR_B_equipartition, t_save::lg_separate_iterations, t_abund::lgAbnReference, t_abund::lgAbTaON, t_abund::lgAbundancesSet, t_abund::lgAbunTabl, t_abund::lgAGN, t_dense::lgAsChoose, t_rfield::lgBeamed, t_trace::lgBug2nu, t_trace::lgCalBug, t_atmdat::lgCalpgmOn, t_trace::lgCarBug, t_opac::lgCaseB, t_opac::lgCaseB_HummerStorey, t_opac::lgCaseB_no_pdest, t_opac::lgCaseB_no_photo, t_continuum::lgCheckEnergyEveryZone, t_atmdat::lgChiantiExp, t_atmdat::lgChiantiLevelsSet, t_atmdat::lgChiantiLvl2Hybrid, t_atmdat::lgChiantiOn, t_atmdat::lgChiantiPrint, t_rfield::lgCMB_set, t_atmdat::lgCollIonOn, t_trace::lgComBug, t_rfield::lgComptonOn, t_trace::lgConBug, t_pressure::lgContRadPresOn, t_trace::lgCoolTr, t_grid::lgCrash, t_grid::lgCrashEval, t_dense::lgDenFlucOn, t_dense::lgDenFlucRadius, t_dense::lgDenseInitConstant, t_prt::lgDiffuseInward, t_prt::lgDiffuseOutward, Wind::lgDisk, t_trace::lgDrBug, t_save::lgDRHash, t_save::lgDRPLst, t_save::lgDTHash, t_save::lgDTPLst, t_trace::lgDustBug, t_trace::lgESOURCE, t_prt::lgFaintOn, t_trace::lgFeBug, t_save::lgFLUSH, t_prt::lgFntSet, t_fudgec::lgFudgeUsed, t_rfield::lgGamrOK, t_atmdat::lgGbarOn, t_save::lgHashEndIter, t_trace::lgHBug, t_trace::lgHeatBug, t_trace::lgHeavyBug, t_trace::lgHeBug, t_hextra::lgHextraDensity, t_hextra::lgHextraDepth, t_hextra::lgHextraSS, t_rfield::lgHPhtOK, t_rfield::lgInducProcess, t_optimize::lgInitialParse, t_trace::lgIsoTraceFull, t_grid::lgKeepMainOutputSeparate, t_atmdat::lgLamdaLevelsSet, t_atmdat::lgLamdaOn, t_atmdat::lgLamdaPrint, t_save::lgLuminosityOld, t_rfield::lgMMok, t_trace::lgNeBug, t_grid::lgNegativeIncrements, t_trace::lgNeonBug, t_noexec::lgNoExec, t_prt::lgOnlyHead, t_prt::lgOnlyZone, t_trace::lgOpacBug, t_rfield::lgOpacityFine, t_trace::lgOptcBug, t_optimize::lgOptCont, t_optimize::lgOptDiam, t_optimize::lgOptimFlow, t_optimize::lgOptimize, t_optimize::lgOptLum, t_trace::lgOTSBug, t_rfield::lgOutOnly, t_grid::lgParallel, t_optimize::lgParallel, t_trace::lgPointBug, t_thermal::lgPredNextTe, t_pressure::lgPres_magnetic_ON, t_pressure::lgPres_radiation_ON, t_pressure::lgPres_ram_ON, t_pressure::lgPressureInitialSpecified, t_dense::lgPressureVaryTime, t_prt::lgPrintBlock, t_prt::lgPrintBlockEmergent, t_prt::lgPrintBlockIntrinsic, t_prt::lgPrintColumns, t_prt::lgPrintFluxEarth, t_prt::lgPrintHeating, t_prt::lgPrintHTML, t_prt::lgPrintLineAirWavelengths, t_prt::lgPrintLineCumulative, t_prt::lgPrnAges, t_prt::lgPrnColl, t_prt::lgPrnHeat, t_prt::lgPrnInwd, t_prt::lgPrnIsoCollapsed, t_prt::lgPrnLineCell, t_prt::lgPrnPump, t_prt::lgPrtArry, t_prt::lgPrtCitations, t_prt::lgPrtContIndices, t_prt::lgPrtLastIt, t_prt::lgPrtLineArray, t_prt::lgPrtLineLog, t_prt::lgPrtMaser, t_prt::lgPrtShort, t_prt::lgPrtStart, t_prt::lgPrtTau, t_save::lgPunContinuum, t_save::lgSaveDataGf, t_save::lgSaveDataRates, t_save::lgSaveDataWn, t_save::lgSaveEveryZone, t_grid::lgSaveXspec, t_trace::lgSecIon, t_geometry::lgSizeSet, t_prt::lgSortLines, t_prt::lgSourceReflected, t_prt::lgSourceTransmitted, t_rfield::lgSphericalDilution, t_rt::lgStarkON, t_StopCalc::lgStop21cm, t_StopCalc::lgStopSpeciesColumn, t_atmdat::lgStoutLevelsSet, t_atmdat::lgStoutLvl2Hybrid, t_atmdat::lgStoutOn, t_atmdat::lgStoutPrint, t_save::lgSubtrCont, t_prt::lgSurfaceBrightness, t_prt::lgSurfaceBrightness_SR, t_thermal::lgTeBD96, t_thermal::lgTeHigh, t_thermal::lgTemperatureConstant, t_thermal::lgTemperatureConstantCommandParsed, t_thermal::lgTeSN99, t_thermal::lgTeTLaw, t_rfield::lgTimeVary, t_thermal::lgTLaw, t_trace::lgTr8446, t_trace::lgTrace, t_trace::lgTrace3Bod, t_save::lgTraceConvergeBaseHash, t_trace::lgTraceMole, t_dynamics::lgTracePrint, t_trace::lgTrDiff, t_trace::lgTrLevN, t_trace::lgTrLine, t_optimize::lgTrOpt, t_trace::lgTrOvrd, t_hextra::lgTurbHeatVaryTime, Wind::lgVelPos, t_trace::lgWind, Wind::lgWindOK, t_rfield::lgXRayOK, LIMELM, LIMPUN, LIMSPC, LINE_CONT_SHIELD_FEDERMAN, t_optimize::lineids, t_hcmap::MapZone, t_cpu_i::MPIMode(), MS_DEFAULT, t_pseudo_cont::nBins, t_atmdat::nChiantiMaxLevels, t_atmdat::nChiantiMaxLevelsFe, t_rfield::ncont, t_cpu_i::nCPU(), t_save::ncSaveSkip, t_grid::nCycle, t_atmdat::nDefaultMolLevels, t_atmdat::nDefaultPhotoLevels, t_atmdat::nDefaultPhotoLevelsFe, t_optimize::nEmergent, NFUDGC, t_fudgec::nfudge, NISO, t_optimize::nIterOptim, t_atmdat::nLamdaMaxLevels, t_rt::nLineContShield, t_hcmap::nMapStep, noexec, t_prt::nPrnLineCell, t_trace::npsbug, t_optimize::nRangeSet, t_save::nsave, t_save::nSaveEveryZone, t_prt::nstart, t_atmdat::nStoutMaxLevels, t_atmdat::nStoutMaxLevelsFe, t_StopCalc::nstpl, t_trace::nTrConvg, t_prt::nzdump, t_trace::nznbug, opac, EmissionProxy::opacity(), t_optimize::OptGlobalErr, t_rfield::OpticalDepthScaleFactor, t_optimize::optier, optimize, t_optimize::optint, phycon, pressure, t_pressure::PressureInitialSpecified, t_dense::PressureVaryTimeIndex, t_dense::PressureVaryTimeTimescale, prt, t_prt::PrtTauFnt, pseudoContDef, radius, t_rfield::range, t_hcmap::RangeMap, t_save::Resolution, t_save::ResolutionAbs, rfield, t_rfield::RSFCheck, rt, save, t_abund::ScaleElement, Energy::set(), Wind::setStatic(), t_geometry::size, StopCalc, t_StopCalc::StopDepleteFrac, t_StopCalc::StopElecDensity, t_StopCalc::StopElecFrac, t_StopCalc::StopH2MoleFrac, t_StopCalc::StopHPlusFrac, t_StopCalc::StopVelocity, t_rfield::TableRadius, t_StopCalc::tauend, t_opac::taumin, t_StopCalc::taunu, TauZero(), t_StopCalc::TeFloor, t_optimize::temp_error, t_phycon::TEMP_LIMIT_HIGH, t_optimize::temp_obs, t_phycon::TEMP_STOP_DEFAULT, t_StopCalc::TempHiStopIteration, t_StopCalc::TempHiStopZone, t_StopCalc::TempLoStopIteration, t_StopCalc::TempLoStopZone, t_rfield::tFluxLog, thermal, t_opac::tlamin, t_thermal::tlaw, t_rfield::tNu, t_prt::TooFaint, trace, t_rfield::tslop, t_hextra::TurbHeat, t_grid::useCPU, t_optimize::useCPU, t_save::WeakHeatCool, wind, Wind::windv, Wind::windv0, t_pseudo_cont::wlHi, t_pseudo_cont::wlLo, t_optimize::xLineInt_error, t_optimize::xLineInt_Obs, and t_StopCalc::xMass.

Referenced by cloudy(), and grid_do().

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void InitSimPostparse ( void  )

initialize values at start of simulation, called after parser, sets initial or zero values at start of each sim in grid

References Wind::AccelGravity, AllTransitions, ASSERT, atoms, cdEXIT, t_elementnames::chElementSym, t_isoCTRL::chISO, t_rfield::cinrat, t_rfield::cmcool, colliders, Wind::comass, t_rfield::comtot, t_atoms::d5200r, DEBUG_ENTRY, dense, diatoms, Wind::DiskRadius, t_dense::eden, elementnames, t_rfield::EnerGammaRay, t_rfield::EnergyBremsThin, EXIT_FAILURE, t_rfield::extin_mag_B_extended, t_rfield::extin_mag_B_point, t_rfield::extin_mag_V_extended, t_rfield::extin_mag_V_point, findspecieslocal(), fprintf(), t_mole_local::grain_area, h2, diatomics::H2_Read_LTE_cooling_per_H2(), Heavy, ColliderList::init(), t_mole_global::init(), ioQQQ, t_rfield::ipEnergyBremsThin, ipH_LIKE, ipHYDROGEN, iso_ctrl, iso_sp, iso_update_num_levels(), t_iterations::iter_alloc, iterations, t_isoCTRL::lgCompileRecomb, Wind::lgDisk, t_dense::lgElmtOn, diatomics::lgEnabled, t_iterations::lgLastIt, t_isoCTRL::lgPrintNumberOfLevels, t_trace::lgTrace, t_thermal::lgUnstable, t_rfield::lgUSphON, t_trace::lgWind, LIMELM, molezone::location, mean, mole, mole_create_react(), mole_global, MonitorResults, t_iso_sp::n_HighestResolved_local, t_iso_sp::n_HighestResolved_max, t_iso_sp::nCollapsed_local, t_iso_sp::nCollapsed_max, t_rfield::nflux_with_check, NISO, t_monitorresults::nSumErrorCaseMonitor, t_iso_sp::numLevels_local, t_iso_sp::numLevels_max, t_thermal::nUnstable, t_struc::nzonePreviousIteration, t_atoms::p2nit, t_pressure::pinzon, POW2, t_pressure::PresInteg, t_pressure::PresIntegElecThin, pressure, radius, t_radius::Radius, t_atoms::rateMg2, t_iso_sp::Reset(), rfield, rfield_opac_zero(), t_mole_local::set_ion_locations(), t_mean::setup_molecules(), t_iterations::StopRadius, t_iterations::StopThickness, struc, t_monitorresults::SumErrorCaseMonitor, thermal, t_thermal::thist, t_thermal::tlowst, TorF(), trace, wind, and t_Heavy::xLyaHeavy.

Referenced by cloudy().

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void zero ( void  )