#include "cdstd.h"
#include <cstdio>
#include <cstdlib>
#include <cctype>
#include <cmath>
#include <cassert>
#include <cstring>
#include <cfloat>
#include <climits>
#include <ctime>
#include <csignal>
#include <limits>
#include <string>
#include <sstream>
#include <iomanip>
#include <array>
#include <vector>
#include <valarray>
#include <complex>
#include <map>
#include <tuple>
#include <regex>
#include <memory>
#include <stdexcept>
#include <algorithm>
#include <fstream>
#include <bitset>
#include <unordered_map>
#include <numeric>
#include "cloudyconfig.h"
#include "cpu.h"

Include dependency graph for cddefines.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	Singleton< T >

class	Output

class	Fixit

class	cloudy_exit

class	bad_signal

class	bad_assert

class	cloudy_abort

class	t_debug

class	t_nodebug

class	debugtrace< Trace >

Macros
#define	NULL nullptr

#define	STATIC static

#define	float PLEASE_USE_REALNUM_NOT_FLOAT

#define	fopen PLEASE_USE_open_data_NOT_fopen

#define	EXIT_SUCCESS ES_SUCCESS

#define	EXIT_FAILURE ES_FAILURE

#define	lgBOUNDSCHECKVAL false

#define	fixit(a)

#define	cdEXIT(FAIL) throw cloudy_exit( __func__, __FILE__, __LINE__, FAIL )

#define	puts(STR) Using_puts_before_cdEXIT_is_no_longer_needed

#define	DEBUG

#define	ASSERT(exp)

#define	MESSAGE_ASSERT(msg, exp) ASSERT( (msg) ? (exp) : false )

#define	isnan MyIsnan

#define	DEBUG_ENTRY(funcname) ((void)0)

#define	MIN2(a, b) min(a,b)

#define	MIN3(a, b, c) (min(min(a,b),c))

#define	MIN4(a, b, c, d) (min(min(a,b),min(c,d)))

#define	MAX2(a, b) max(a,b)

#define	MAX3(a, b, c) (max(max(a,b),c))

#define	MAX4(a, b, c, d) (max(max(a,b),max(c,d)))

#define	POW2 pow2

#define	POW3 pow3

#define	POW4 pow4

#define	PrintEfmt(F, V) F, V

Typedefs
typedef float	realnum

typedef float	sys_float

Enumerations
enum	exit_type { ES_SUCCESS =0, ES_FAILURE =1, ES_WARNINGS, ES_BOTCHES, ES_CLOUDY_ABORT, ES_BAD_ASSERT, ES_BAD_ALLOC, ES_OUT_OF_RANGE, ES_DOMAIN_ERROR, ES_ILLEGAL_INSTRUCTION, ES_FP_EXCEPTION, ES_SEGFAULT, ES_BUS_ERROR, ES_UNKNOWN_SIGNAL, ES_UNKNOWN_EXCEPTION, ES_TOP }

enum	{ CHARS_SPECIES =10 }

enum	{ CHARS_ISOTOPE_SYM = 6 }

Functions
realnum	operator""_r (unsigned long long l)

realnum	operator""_r (long double l)

FILE *	sys_fopen (const char path, const char mode)

double	fudge (long int ipnt)

void	broken (void)

void	fixit_base (const char func, const char file, int line, const char *reason)

void	CodeReview (void)

void	TestCode (void)

void	MyAssert (const char file, int line, const char comment)

void	cdPrepareExit (exit_type)

void	ShowMe (void)

NORETURN void	TotalInsanity (void)

template<class T >
T	TotalInsanityAsStub ()

NORETURN void	BadRead (void)

int	dbg_printf (int debug, const char *fmt,...)

int	dprintf (FILE fp, const char format,...)

void	cdBacktrace ()

int	fprintf (const Output &stream, const char *format,...)

int	dprintf (const Output &stream, const char *format,...)

bool	read_whole_line (string &chLine, FILE *ioIN)

NORETURN void	OUT_OF_RANGE (const char *str)

NORETURN void	DOMAIN_ERROR (const string &str)

char	tolower (char c)

unsigned char	tolower (unsigned char c)

char	toupper (char c)

unsigned char	toupper (unsigned char c)

char	TorF (bool l)

bool	is_odd (int j)

bool	is_odd (long j)

long	nint (double x)

long	min (int a, long b)

long	min (long a, int b)

double	min (sys_float a, double b)

double	min (double a, sys_float b)

double	powi (double, long int)

double	powpq (double x, int p, int q)

double	pow (double x, int i)

double	pow (double x, long i)

sys_float	pow (sys_float x, int i)

sys_float	pow (sys_float x, long i)

double	pow (sys_float x, double y)

double	pow (double x, sys_float y)

long	max (int a, long b)

long	max (long a, int b)

double	max (sys_float a, double b)

double	max (double a, sys_float b)

template<class T >
void	vzero (vector< T > &vec)

template<class T >
T	sign (T x, T y)

template<class T >
int	sign3 (T x)

bool	fp_equal (sys_float x, sys_float y, int n=3)

bool	fp_equal (double x, double y, int n=3)

bool	fp_equal_tol (sys_float x, sys_float y, sys_float tol)

bool	fp_equal_tol (double x, double y, double tol)

bool	fp_bound (sys_float lo, sys_float x, sys_float hi, int n=3)

bool	fp_bound (double lo, double x, double hi, int n=3)

bool	fp_bound_tol (sys_float lo, sys_float x, sys_float hi, sys_float tol)

bool	fp_bound_tol (double lo, double x, double hi, double tol)

template<class T >
T	pow2 (T a)

template<class T >
T	pow3 (T a)

template<class T >
T	pow4 (T a)

sys_float	SDIV (sys_float x)

double	SDIV (double x)

sys_float	safe_div (sys_float x, sys_float y, sys_float res_0by0)

sys_float	safe_div (sys_float x, sys_float y)

double	safe_div (double x, double y, double res_0by0)

double	safe_div (double x, double y)

template<class T >
void	invalidate_array (T *p, size_t size)

void	invalidate_array (double *p, size_t size)

void	invalidate_array (sys_float *p, size_t size)

template<class T >
T *	get_ptr (T *v)

template<class T >
T *	get_ptr (valarray< T > &v)

template<class T , class U >
T *	get_ptr (vector< T, U > &v)

template<class T >
const T *	get_ptr (const valarray< T > &v)

template<class T , class U >
const T *	get_ptr (const vector< T, U > &v)

double	csphot (long int inu, long int ithr, long int iofset)

double	AnuUnit (realnum energy)

void	cap4 (char chCAP, const char chLab)

void	uncaps (char *chCard)

void	uncaps (string &chCard)

void	caps (char *chCard)

void	caps (string &chCard)

double	FFmtRead (const char chCard, long int ipnt, long int last, bool *lgEOL)

long	nMatch (const char chKey, const char chCard)

const char *	strstr_s (const char haystack, const char needle)

char *	strstr_s (char haystack, const char needle)

const char *	strchr_s (const char *s, int c)

char *	strchr_s (char *s, int c)

long int	ipow (long, long)

size_t	sncatf (char buf, size_t bufSize, const char fmt,...)

size_t	sncatf (ostringstream &buf, const char *fmt,...)

void	PrintE82 (FILE *, double)

void	PrintE71 (FILE *, double)

void	PrintE93 (FILE *, double)

sys_float	sexp (sys_float x)

double	sexp (double x)

double	dsexp (double x)

double	exp10 (double x)

sys_float	exp10f (sys_float x)

sys_float	exp10 (sys_float x)

double	plankf (long int ip)

istream &	SafeGetline (istream &is, string &t)

void	spsort (realnum x[], long int n, long int iperm[], int kflag, int *ier)

Variables
FILE *	ioQQQ

FILE *	ioStdin

FILE *	ioMAP

FILE *	ioPrnErr

bool	lgTestCodeCalled

bool	lgTestCodeEnabled

bool	lgPrnErr

long int	nzone

double	fnzone

long int	iteration

const double	ZeroNum

const void *	ZeroPtr

const int	FILENAME_PATH_LENGTH = 200

const int	FILENAME_PATH_LENGTH_2 = FILENAME_PATH_LENGTH*2

const int	INPUT_LINE_LENGTH = 2000

const int	NCHLAB = 20

const int	LIMELM = 30

const int	NISO = 2

const int	NHYDRO_MAX_LEVEL = 401

const double	MAX_DENSITY = 1.e24

const double	DEPTH_OFFSET = 1.e-30

const int	ipRecEsc = 2

const int	ipRecNetEsc = 1

const int	ipRecRad = 0

const int	ipPRD = 1

const int	ipCRD = -1

const int	ipCRDW = 2

const int	ipLY_A = -2

const int	ipHYDROGEN = 0

const int	ipHELIUM = 1

const int	ipLITHIUM = 2

const int	ipBERYLLIUM = 3

const int	ipBORON = 4

const int	ipCARBON = 5

const int	ipNITROGEN = 6

const int	ipOXYGEN = 7

const int	ipFLUORINE = 8

const int	ipNEON = 9

const int	ipSODIUM = 10

const int	ipMAGNESIUM = 11

const int	ipALUMINIUM = 12

const int	ipSILICON = 13

const int	ipPHOSPHORUS = 14

const int	ipSULPHUR = 15

const int	ipCHLORINE = 16

const int	ipARGON = 17

const int	ipPOTASSIUM = 18

const int	ipCALCIUM = 19

const int	ipSCANDIUM = 20

const int	ipTITANIUM = 21

const int	ipVANADIUM = 22

const int	ipCHROMIUM = 23

const int	ipMANGANESE = 24

const int	ipIRON = 25

const int	ipCOBALT = 26

const int	ipNICKEL = 27

const int	ipCOPPER = 28

const int	ipZINC = 29

const int	ipKRYPTON = 35

const double	SEXP_LIMIT = 84.

const double	DSEXP_LIMIT = 680.

Macro Definition Documentation

#define ASSERT ( exp )

Value:

do { \
                        if (UNLIKELY(!(exp))) \
                                throw bad_assert(__FILE__,__LINE__,"Failed: " #exp); \
                } while( 0 )

Referenced by abscf(), AbundChange(), addComment(), TransitionProxy::AddHiState(), addKeyword_dbl(), addKeyword_num(), addKeyword_txt(), TransitionProxy::AddLine2Stack(), TransitionProxy::AddLoState(), AgeCheck(), multi_arr< StoutColls, 2 >::alloc(), flex_arr< double >::alloc(), atmdat_2phot_setSplineCoefs(), atmdat_2phot_shapefunction(), atmdat_CHIANTI_readin(), atmdat_HS_caseB(), atmdat_LAMDA_readin(), atmdat_readin(), atmdat_STOUT_readin(), atom_level2(), Badnell_DR_rate_eval(), Badnell_rec_init(), Badnell_RR_rate_eval(), bh_log(), bhg_log(), bhG_mx(), bhGm_mx(), bhGp_mx(), bhintegrand_log(), t_gaunt::brems_cool(), t_gaunt::brems_opac(), t_gaunt::brems_rt(), t_gaunt::brems_sum_ions(), t_timesc::calc_therm_timesc(), CalcTwoPhotonEmission(), CalcTwoPhotonRates(), cdEmis_ip(), cdLine_ip(), cdMain(), cdSPEC2(), LinSv::chALabSet(), ChargTranPun(), ChargTranSumHeat(), EmissionProxy::check(), TransitionProxy::check(), TransitionConstProxy::check(), EmissionConstProxy::check(), check_mult_path(), LinSv::checkEmergent(), t_mesh::CheckMesh(), CHIANTI_Upsilon(), chIonLbl(), clean_up(), cloudy(), t_ADfA::coll_ion_hybrid(), t_ADfA::coll_ion_wrapper(), ColliderDensities::ColliderDensities(), collision_strength_VF01(), CollisSuppres(), ColStrGBar(), CollisionProxy::ColUL(), molecule::compare(), conorm(), ContBandsCreate(), ContCreateMesh(), ContCreatePointers(), ContRate(), ContSetIntensity(), ConvBase(), ConvCrossSect2CollStr(), ConvFail(), ConvInitSolution(), ConvIterCheck(), ConvRate2CS(), CoolAdd(), CoolEvaluate(), coolpr(), TransitionProxy::copy(), CoStarInitialize(), create_isotopologues_one_position(), cross_section(), t_hydro_tbl::cs(), CS_l_mixing(), CS_l_mixing_PS64(), CS_l_mixing_PS64_expI(), CS_l_mixing_S62(), CS_PercivalRichards78(), CS_VS80(), CSresolver(), da(), database_readin(), db_basename_to_spectral(), dBase_solve(), dBaseAbund(), DebyeDeriv(), iter_track::deriv(), dftori(), t_mole_local::dissoc_rate(), t_dynamics::doNonEquilibriumSolve(), DoSatelliteLines(), DumpLine(), DynaIonize(), DynaIterEnd(), DynaNewStep(), DynaPrtZone(), DynaSaveLast(), DynaStartZone(), EchoModel(), eden_sum(), EdenChange(), EH2_eval(), emergent_line(), emit_frac(), esc_2side_base(), esc_CRDcore(), esc_CRDwing(), esc_CRDwing_1side(), esc_PRD_1side(), escmase(), expn2_scaled(), F21_mx(), FastVoigtH(), Parser::FFmtRead(), ffun(), ffun1(), fill_array(), multi_geom< d, MEM_LAYOUT_VAL >::finalize(), find_solution(), FindIndex(), t_LineSave::findline(), t_mole_local::findrk(), FindStrongestLineLabels(), findUniqueLen(), flxCell(), FndLineHt(), fndstr(), ForbiddenAuls(), fp_bound(), fp_bound_tol(), fp_equal(), fp_equal_tol(), fsff_log10(), funjac(), GammaBn(), GammaK(), t_gaunt::gauntff(), Spectrum::get_flux(), get_total_abundance_ions(), GetDopplerWidth(), GetFracPop(), GetGF(), GetHelikeCollisionStrength(), GetHlikeCollisionStrength(), GetHS98CrossSection(), diatomics::GetIndices(), diatomics::getLine(), GetProbDistr_LowLimit(), getrf_wrapper(), getrs_wrapper(), GetStandardHeLines(), GetString(), gett2(), gett2o3(), GrainCharge(), GrainChargeTemp(), GrainDrift(), GrainElecEmis1(), GrainElecRecomb1(), GrainMakeDiffuse(), GrainScreen(), GrainsInit(), GrainTemperature(), GrainUpdateRadius1(), GrainUpdateRadius2(), GravitationalPressure(), GridCompile(), GridRetrieveXSPECData(), gridXspec(), H21_cm_pops(), diatomics::H2_Accel(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_ContPoint(), diatomics::H2_Cooling(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_PunchDo(), diatomics::H2_RadPress(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), diatomics::H2_RT_tau_inc(), diatomics::H2_X_coll_rate_evaluate(), diatomics::H2_X_sink_and_source(), t_ADfA::h_coll_str(), H_cross_section(), H_Einstein_A(), H_photo_cs_log10(), t_ADfA::H_rad_rec(), HCSAR_interp(), HCTIon(), HCTRecom(), he_1trans(), He_cross_section(), HeatSum(), HeCSInterp(), HeCSTableInterp(), helike_energy(), helike_quantum_defect(), helike_transprob(), helike_transprob_collapsed_to_collapsed(), helike_transprob_collapsed_to_resolved(), highen(), Hion_coll_ioniz_ratecoef(), HlikeCSInterp(), HomogeneousSource(), t_ADfA::hpfit(), hri_log10(), hrii_log(), hunt_bisect(), hunt_bisect_reverse(), hv(), Hydcs123(), hydro_energy(), hydro_Fujimoto_deexcit(), hydro_Lebedev_deexcit(), hydro_transprob(), hydro_transprob_collapsed_to_collapsed(), hydro_transprob_collapsed_to_resolved(), hydro_vs_coll_recomb(), hydro_vs_coll_str(), hydro_vs_deexcit(), hydro_vs_ioniz(), HydroLevel(), HydroOscilStr(), HydroRecCool(), HyperfineCreate(), HyperfineCS(), HyperfineTspin(), igam(), igamc(), igamc_scaled(), ran_pool< uint8 >::init(), diatomics::init(), LinSv::init(), init_eps(), phymir_state< X, Y, NP, NSTR >::init_minmax(), init_seed(), t_yield::init_yield(), InitCoreloadPostparse(), InitEmissivities(), InitGridCoStar(), phymir_state< X, Y, NP, NSTR >::initial_run(), InitIndexArrays(), InitSimPostparse(), insertToken(), InterpCollRate(), InterpolateGridCoStar(), InterpolateModel(), InterpolateModelCoStar(), inv_ufunct(), multi_arr< StoutColls, 2 >::invalidate(), ion_collis(), ion_CX(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_recombAGN(), ion_solver(), ion_trim(), ion_trim2(), ion_trim_small(), ion_trim_validate(), ion_wrapper(), ipFineCont(), ipLineEnergy(), t_mesh::ipointC(), ipShells(), isAtomicIonValid(), isBareNucleus(), iso_allocate(), iso_assign_quantum_numbers(), iso_cascade(), iso_collide(), iso_collisional_ionization(), iso_continuum_lower(), iso_cool(), iso_create(), iso_dielec_recomb_rate(), iso_error_generation(), iso_get_collision_strength(), iso_ionize_recombine(), iso_level(), iso_photo(), iso_prt_pops(), iso_put_error(), iso_put_recomb_error(), iso_rad_rec_cooling_discrete(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_recomb_setup(), iso_renorm(), iso_RRCoef_Te(), iso_satellite(), iso_set_ion_rates(), iso_setOpacity(), iso_solve(), iso_state_lifetime(), iso_suprathermal(), iso_update_num_levels(), iso_update_rates(), iter_end_check(), IterRestart(), IterStart(), t_mesh::ithreshC(), lgCheckMonitors(), lgReadAtmosphereTail(), Wind::lgStatic(), lgValidModel(), lincom(), lindst1(), LineConvRate2CS(), lines_general(), lines_helium(), lines_hydro(), lines_setup(), LineStackCreate(), linfit(), linint(), LoadIsotopes(), MakeInputLine(), mc_escape(), MD5string_core(), MeanMassOfElement(), mie_auxiliary2(), mie_calc_ial(), mie_cs(), mie_cs_size_distr(), mie_read_mix(), mie_read_opc(), diatomics::Mol_Photo_Diss_Rates(), MolDissocCrossSection(), mole_eval_balance(), mole_eval_dynamic_balance(), mole_eval_sources(), mole_generate_isotopologue_reactions(), diatomics::mole_H2_form(), mole_h2_grain_form(), diatomics::mole_H2_LTE(), mole_h_reactions(), mole_make_groups(), mole_make_list(), mole_partition_function(), mole_return_cached_species(), mole_rk_bigchange(), mole_solve(), mole_update_species_cache(), Monointerp::Monointerp(), my_Integrand_VF01_E::my_Integrand_VF01_E(), t_ran::new_rank(), newisotope(), newreact(), newspecies(), nMatch(), Parser::nMatch1(), nWord(), OccupationNumberLine(), ofit(), Opacity_iso_photo_cs(), OpacityAdd1Element(), OpacityAdd1Subshell(), OpacityAdd1SubshellInduc(), OpacityAddTotal(), diatomics::OpacityCreate(), OpacityCreate1Element(), OpacityCreateAll(), OpacityCreatePowerLaw(), OpacityCreateReilMan(), OpacityValenceRescale(), open_data(), setCollRate::operator()(), Atom_LevelN::operator()(), my_Integrand_S62::operator()(), Spectrum::operator[](), phymir_state< X, Y, NP, NSTR >::optimize(), optimize_func(), phymir_state< X, Y, NP, NSTR >::optimize_with_restart(), TransitionProxy::outline(), outline_base(), t_gaunt::p_gauntff_vec_sub(), t_hydro_tbl::p_initn(), t_hydro_tbl::p_initnl(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), EnergyEntry::p_set_ip(), t_mesh::p_SetupMesh(), ran_pool< uint8 >::p_update_pool(), parse_reaction(), parse_save_average(), parse_species_label(), parse_udfa(), ParseAbundances(), ParseCompile(), ParseCosmicRays(), ParseCrashDo(), ParseDatabaseISO(), ParseDynaTime(), ParseElement(), ParseEnergy(), ParseFluc(), ParseGrid(), ParseIntensity(), ParseInterp(), ParseMonitorResults(), ParsePhi(), ParseQH(), ParseTable(), ParseVLaw(), PE_init(), t_ADfA::phfit(), PlanckIntegral(), PntForLine(), PressureRadiationLine(), PresTotCurrent(), PrintCenterLine(), PrintRates(), PrintSpectrum(), process_output(), processIndices(), PrtAllTau(), PrtColumns(), PrtComment(), PrtFinal(), PrtLinePres(), PrtZone(), punchFITS_EnergyHeader(), punchFITS_GenericHeader(), punchFITS_ParamData(), punchFITS_ParamHeader(), punchFITS_PrimaryHeader(), punchFITS_SpectraData(), punchFITS_SpectraHeader(), punchFITSimg_ExtensionHeader(), punchFITSimg_PrimaryHeader(), PutCS(), PutLine(), qheat(), qheat_init(), qintr(), QN2ind(), radius_first(), radius_increment(), radius_next(), RauchReadMPP(), read_Helike_cross_sections(), read_Hummer_Storey(), read_ionization_potentials(), diatomics::Read_Mol_Diss_cross_sections(), read_SH98_He1_cross_sections(), read_species_file(), read_UTA_lines(), ReadAugerData(), ReadBadnellAIData(), ReadCollisionRateTable(), ReadTable(), flex_arr< double >::realloc(), RebinAtmosphere(), RebinFind(), RebinQHeatResults(), RebinSingleCell(), reduced_mass_rel(), RefIndex(), renorm_solution(), multi_geom< d, MEM_LAYOUT_VAL >::reserve(), multi_arr< StoutColls, 2 >::reserve(), flex_arr< double >::reserve(), resetBltin(), setCollRate::resize(), Spectrum::resize(), rfield_opac_alloc(), RT_continuum(), RT_continuum_shield_fcn_point(), RT_DestHummer(), RT_DestProb(), RT_diffuse(), RT_iso_integrate_RRC(), RT_line_fine_opacity(), RT_line_one_escape(), RT_line_one_fine(), RT_line_pumping(), RT_LineWidth(), RT_OTS(), RT_OTS_AddCont(), RT_OTS_AddLine(), RT_OTS_PrtRate(), RT_OTS_Update(), RT_recom_effic(), RT_tau_inc(), RT_tau_init(), RTesc_lya(), S62BesselInvert(), SanityCheckBegin(), save_opacity(), SaveDo(), saveFITSfile(), SaveHeat(), SaveResults(), SaveSpecies(), SaveSpeciesBands(), saveXSPEC(), ScaleAllDensities(), ScanProbDistr(), scqdri(), search_limit(), SecIoniz(), PresMode::set(), t_mole_local::set_ion_locations(), SetLimits(), SetLimitsSub(), SetNChrgStates(), t_mesh::setResolutionScaleFactor(), GroupMap::setup(), size_distr(), solve_system(), diatomics::SolveExcitedElectronicLevels(), diatomics::SolveSomeGroundElectronicLevels(), spectral_to_chemical(), spline_cubic_set(), store_new_densities(), StoutCollRate(), sum_radiation(), SumDensities(), t_ADfA::t_ADfA(), tbl_fun(), TempInterp(), TempInterp2(), total_molecule_elems(), t_hydro_tbl::tp(), TruncatedNormal(), TryDoubleStep(), TwoPhotonSetup(), uderiv(), ufunct(), GroupMap::updateMolecules(), UpdatePot(), UpdatePot1(), Flux::uu(), WavlenErrorGet(), t_hydro_tbl::wn(), WriteASCIIHead(), y0b(), y0psa(), y1psa(), y2pa(), y2s(), Yfunc(), multi_arr< StoutColls, 2 >::zero(), iter_track::zero_fit(), ZoneEnd(), and ZoneStart().

#define cdEXIT ( FAIL ) throw cloudy_exit( __func__, __FILE__, __LINE__, FAIL )

Referenced by abund_starburst(), AbundancesSet(), AbundancesTable(), t_PredCont::add(), LinSv::addComponent(), LinSv::addComponentID(), AGN_Hemis(), atmdat_CHIANTI_readin(), atmdat_dielrec_fe(), atmdat_HS_caseB(), atmdat_LAMDA_readin(), atmdat_readin(), atmdat_STOUT_readin(), Badnell_rec_init(), BadRead(), bessel_y0(), bessel_y1(), bessel_yn(), bhG_mx(), C6cs123(), Ca20cs123(), cdClock(), cdDrive(), cdExecTime(), cdGetLineList(), cdInput(), cdMain(), cdMemory(), cdRead(), cdSPEC2(), ChargTranPun(), pseudo_cont::check_index_fatal(), band_emission::check_index_fatal(), check_LAMDA_comment(), t_mesh::CheckMesh(), CheckVal(), chi2_func(), chkCaHeps(), cnewton(), Parser::CommandError(), conorm(), ContBandsCreate(), ContCreatePointers(), phymir_state< X, Y, NP, NSTR >::continue_from_state(), ContSetIntensity(), ConvCrossSect2CollStr(), ConvFail(), CoolEvaluate(), CoolHyperfine(), coolpr(), CoolSave(), CoStarInterpolate(), d1mach(), dBase_solve(), Parser::doSetVar(), DynaIterStart(), e1(), e1_scaled(), e2(), ellpk(), Parser::Error(), DataParser::errorAbort(), ErrorMessage(), esc_CRDwing(), escmase(), expn(), extractLevels(), factorial(), fc2_scl(), Fe26cs123(), ffun1(), find_arr(), find_solution(), t_LineSave::findline(), findspecies_validate(), fudge(), gauss_legendre(), Energy::get(), Parser::getElement(), Parser::getFirstChunk(), Parser::getFirstChunkRaw(), GetFracPop(), GetHelikeCollisionStrength(), band_cont::getInten(), GetJenkins09(), getLevelsGeneric(), Parser::getLineID(), GetLineRec(), GetMetalsDeplete(), GetOptColDen(), GetOptLineInt(), GetOptTemp(), Parser::getPairs(), t_cpu_i::getPathList(), GetPotValues(), getSpeciesGeneric(), getTransition(), GrainCharge(), GrainsInit(), grid_do(), GridRetrieveXSPECData(), gridXspec(), GrnVryDpth(), diatomics::H2_Colden(), diatomics::H2_CollidRateRead(), diatomics::H2_Level_low_matrix(), diatomics::H2_ParseSave(), diatomics::H2_Punch_line_data(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_Read_LTE_cooling_per_H2(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), H_Einstein_A_log10(), H_photo_cs_log10(), HCSAR_interp(), He2cs123(), HeatSum(), HeCollidSetup(), Parser::help(), t_ADfA::hpfit(), hri_log10(), Hydcs123(), HydroEinstA(), HydroRecCool(), HyperfineCreate(), hypho(), diatomics::init(), t_mole_global::init(), t_yield::init_yield(), InitEmissivities(), InitGrid(), InitIndexArrays(), InitSimPostparse(), InterpolateGridCoStar(), InterpolateModel(), InterpolateRectGrid(), inv_ufunct(), ipoint(), iso_level(), iso_radiative_recomb(), iso_recomb_setup(), iso_set_ion_rates(), iso_update_num_levels(), iter_end_check(), IterStart(), lfactorial(), lgCheckMonitors(), lgReadAtmosphereTail(), LimitSh(), lines(), LoadIsotopes(), LinSv::makeBlend(), MakeInputLine(), map_do(), mie_auxiliary(), mie_cs(), mie_find_slope(), mie_next_line(), mie_read_double(), mie_read_long(), mie_read_mix(), mie_read_ocn(), mie_read_opc(), mie_read_realnum(), mie_read_rfi(), mie_read_szd(), mie_repair(), mie_write_opc(), molcol(), mole_create_react(), my_Integrand_VF01_E::my_Integrand_VF01_E(), Ne10cs123(), newreact(), Parser::NoNumb(), OpacityAddTotal(), OpacityCreateAll(), OpacityCreateReilMan(), Atom_LevelN::operator()(), FunctLAMDA::operator()(), optimize_do(), optimize_func(), optimize_phymir(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), Flux::p_InternalFluxUnit(), phymir_state< X, Y, NP, NSTR >::p_rd_state(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), EnergyEntry::p_set_ip(), parse_reaction(), parse_save_average(), Parse_Save_Line_RT(), ParseAbsMag(), ParseAbundances(), ParseAge(), ParseAgn(), ParseAperture(), ParseBackgrd(), ParseBlackbody(), ParseBremsstrahlung(), ParseChemistry(), ParseCMB(), ParseCommands(), ParseCompile(), ParseConstant(), ParseCoronal(), ParseCosmicRays(), ParseCovering(), ParseCrashDo(), ParseDarkMatter(), ParseDatabase(), ParseDatabaseH2(), ParseDatabaseISO(), ParseDielectronic(), ParseDiffuse(), ParseDLaw(), ParseDont(), ParseDynaTime(), ParseDynaWind(), ParseElement(), ParseEnergy(), ParseExtinguish(), ParseF_nu(), ParseFluc(), ParseGlobule(), ParseGrain(), ParseGravity(), ParseGrid(), ParseHDEN(), ParseHeLike(), ParseHExtra(), ParseHydrogen(), ParseIlluminate(), ParseIntensity(), ParseInterp(), ParseIonPar(), ParseLaser(), ParseLineList(), ParseLuminosity(), ParseMagnet(), ParseMap(), ParseMetal(), ParseMonitorResults(), ParseNorm(), ParseNumber(), ParseOptimize(), ParsePGrains(), ParsePhi(), ParsePowerlawContinuum(), ParsePrint(), ParseQH(), ParseRadius(), ParseRangeOption(), ParseRatio(), ParseSave(), ParseSet(), ParseSpecial(), ParseSpecies(), ParseStop(), ParseTable(), ParseTLaw(), ParseTolerance(), ParseTrace(), ParseTurbulence(), PntForLine(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtComment(), PrtElem(), PrtFinal(), PrtLineSum(), prtLineType(), punchFITS_SpectraData(), qintr(), r1mach(), t_ADfA::rad_rec(), radius_next(), RandomCrash(), RauchReadMPP(), rd_block(), read_data(), read_Helike_cross_sections(), read_Hummer_Storey(), read_level2_lines(), read_mewe_gbar(), read_SH98_He1_cross_sections(), read_UTA_lines(), Parser::readLaw(), Parser::readList(), ReadTable(), t_conv::register_(), RT_continuum(), RT_DestProb(), RT_line_escape(), RT_line_one_fine(), RT_recom_effic(), RT_tau_init(), S2Aul(), SanityCheck(), SanityCheckBegin(), SanityCheckGaunt(), save_average(), save_line(), Save_Line_RT(), save_opacity(), SaveDo(), SaveLineData(), SaveLineStuff(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesPseudoCont(), search_limit(), PresMode::set(), Energy::set(), setIsoNelemFlag(), SetLimits(), setProperties(), t_prt_matrix::setSpecies(), size_distr(), solveions(), speciesCheck(), spectral_to_chemical(), spline_cubic_set(), Split(), StandardEnergyUnit(), StandardFluxUnit(), StoutCollRate(), StuffComment(), t_ADfA::t_ADfA(), t_physconst::t_physconst(), DepthTable::tabval(), TempInterp(), test_isMolecule(), TotalInsanity(), totlin(), trim_levels(), uderiv(), ufunct(), validate_magic_number_1arg(), validate_magic_number_3arg(), t_mesh::ValidateEdges(), wr_block(), XERBLA(), xerror_(), y0b01(), Yfunc(), and zoneDensity().

#define DEBUG

to avoid errors introduced by C's infamous double-negative logic, this uses NDEBUG (the ANSI std macro used to tell assert that we are not debugging) to define DEBUG

#define DEBUG_ENTRY ( funcname ) ((void)0)

#define EXIT_FAILURE ES_FAILURE

Referenced by abund_starburst(), AbundancesSet(), AbundancesTable(), t_PredCont::add(), LinSv::addComponent(), LinSv::addComponentID(), atmdat_CHIANTI_readin(), atmdat_dielrec_fe(), atmdat_HS_caseB(), atmdat_LAMDA_readin(), atmdat_readin(), atmdat_STOUT_readin(), Badnell_rec_init(), BadRead(), bessel_y0(), bessel_y1(), bessel_yn(), bhG_mx(), C6cs123(), Ca20cs123(), cdClock(), cdDrive(), cdExecTime(), cdGetLineList(), cdMemory(), cdRead(), cdSPEC2(), ChargTranPun(), pseudo_cont::check_index_fatal(), band_emission::check_index_fatal(), check_LAMDA_comment(), t_mesh::CheckMesh(), CheckVal(), chi2_func(), chkCaHeps(), cnewton(), Parser::CommandError(), conorm(), ContBandsCreate(), ContCreatePointers(), phymir_state< X, Y, NP, NSTR >::continue_from_state(), ContSetIntensity(), ConvCrossSect2CollStr(), ConvFail(), CoolEvaluate(), CoolHyperfine(), coolpr(), CoolSave(), d1mach(), dBase_solve(), Parser::doSetVar(), DynaIterStart(), e1(), e1_scaled(), e2(), ellpk(), Parser::Error(), DataParser::errorAbort(), ErrorMessage(), esc_CRDwing(), escmase(), expn(), extractLevels(), factorial(), fc2_scl(), Fe26cs123(), ffun1(), find_arr(), find_solution(), t_LineSave::findline(), findspecies_validate(), fudge(), gauss_legendre(), Energy::get(), Parser::getElement(), Parser::getFirstChunk(), Parser::getFirstChunkRaw(), GetFracPop(), GetHelikeCollisionStrength(), band_cont::getInten(), GetJenkins09(), getLevelsGeneric(), Parser::getLineID(), GetLineRec(), GetMetalsDeplete(), GetOptColDen(), GetOptLineInt(), GetOptTemp(), Parser::getPairs(), t_cpu_i::getPathList(), GetPotValues(), getSpeciesGeneric(), getTransition(), GrainCharge(), GrainsInit(), grid_do(), GridRetrieveXSPECData(), gridXspec(), GrnVryDpth(), diatomics::H2_Colden(), diatomics::H2_CollidRateRead(), diatomics::H2_Level_low_matrix(), diatomics::H2_ParseSave(), diatomics::H2_Punch_line_data(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), H_Einstein_A_log10(), H_photo_cs_log10(), HCSAR_interp(), He2cs123(), HeatSum(), HeCollidSetup(), t_ADfA::hpfit(), hri_log10(), Hydcs123(), HydroEinstA(), HydroRecCool(), HyperfineCreate(), hypho(), load_balance::init(), diatomics::init(), t_mole_global::init(), t_yield::init_yield(), InitGrid(), InitSimPostparse(), InterpolateGridCoStar(), InterpolateModel(), InterpolateRectGrid(), inv_ufunct(), ipoint(), iso_level(), iso_radiative_recomb(), iso_recomb_setup(), iso_set_ion_rates(), iso_update_num_levels(), iter_end_check(), IterStart(), lfactorial(), lgCheckMonitors(), lgReadAtmosphereTail(), LimitSh(), lines(), LoadIsotopes(), main(), LinSv::makeBlend(), MakeInputLine(), map_do(), mie_auxiliary(), mie_cs(), mie_find_slope(), mie_next_line(), mie_read_double(), mie_read_long(), mie_read_mix(), mie_read_ocn(), mie_read_opc(), mie_read_realnum(), mie_read_rfi(), mie_read_szd(), mie_repair(), mie_write_opc(), molcol(), mole_create_react(), my_Integrand_VF01_E::my_Integrand_VF01_E(), Ne10cs123(), newreact(), Parser::NoNumb(), OpacityAddTotal(), OpacityCreateAll(), OpacityCreateReilMan(), Atom_LevelN::operator()(), FunctLAMDA::operator()(), optimize_do(), optimize_func(), optimize_phymir(), t_cpu_i::p_assertValidPath(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), Flux::p_InternalFluxUnit(), phymir_state< X, Y, NP, NSTR >::p_rd_state(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), EnergyEntry::p_set_ip(), parse_reaction(), parse_save_average(), Parse_Save_Line_RT(), ParseAbsMag(), ParseAbundances(), ParseAge(), ParseAgn(), ParseAperture(), ParseBackgrd(), ParseBlackbody(), ParseBremsstrahlung(), ParseChemistry(), ParseCMB(), ParseCommands(), ParseCompile(), ParseConstant(), ParseCoronal(), ParseCosmicRays(), ParseCovering(), ParseCrashDo(), ParseDarkMatter(), ParseDatabase(), ParseDatabaseH2(), ParseDatabaseISO(), ParseDielectronic(), ParseDiffuse(), ParseDLaw(), ParseDont(), ParseDynaTime(), ParseDynaWind(), ParseElement(), ParseEnergy(), ParseExtinguish(), ParseF_nu(), ParseFluc(), ParseGlobule(), ParseGrain(), ParseGravity(), ParseGrid(), ParseHDEN(), ParseHeLike(), ParseHExtra(), ParseHydrogen(), ParseIlluminate(), ParseIntensity(), ParseInterp(), ParseIonPar(), ParseLaser(), ParseLineList(), ParseLuminosity(), ParseMagnet(), ParseMap(), ParseMetal(), ParseMonitorResults(), ParseNorm(), ParseNumber(), ParseOptimize(), ParsePGrains(), ParsePhi(), ParsePowerlawContinuum(), ParsePrint(), ParseQH(), ParseRadius(), ParseRangeOption(), ParseRatio(), ParseSave(), ParseSet(), ParseSpecial(), ParseSpecies(), ParseStop(), ParseTable(), ParseTLaw(), ParseTolerance(), ParseTrace(), ParseTurbulence(), PntForLine(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtComment(), PrtElem(), PrtFinal(), PrtLineSum(), prtLineType(), punchFITS_SpectraData(), qintr(), r1mach(), t_ADfA::rad_rec(), radius_next(), RandomCrash(), RauchReadMPP(), rd_block(), read_data(), read_Helike_cross_sections(), read_Hummer_Storey(), read_level2_lines(), read_mewe_gbar(), read_SH98_He1_cross_sections(), read_UTA_lines(), Parser::readLaw(), Parser::readList(), ReadTable(), t_conv::register_(), RT_continuum(), RT_DestProb(), RT_line_escape(), RT_recom_effic(), RT_tau_init(), S2Aul(), SanityCheck(), SanityCheckBegin(), SanityCheckGaunt(), save_average(), save_line(), Save_Line_RT(), save_opacity(), SaveDo(), SaveLineData(), SaveLineStuff(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesPseudoCont(), search_limit(), PresMode::set(), Energy::set(), setIsoNelemFlag(), SetLimits(), setProperties(), t_prt_matrix::setSpecies(), size_distr(), solveions(), speciesCheck(), spectral_to_chemical(), spline_cubic_set(), Split(), StandardEnergyUnit(), StandardFluxUnit(), StoutCollRate(), StuffComment(), t_ADfA::t_ADfA(), t_physconst::t_physconst(), DepthTable::tabval(), TempInterp(), TotalInsanity(), totlin(), trim_levels(), uderiv(), ufunct(), validate_magic_number_1arg(), validate_magic_number_3arg(), t_mesh::ValidateEdges(), wr_block(), XERBLA(), xerror_(), y0b01(), Yfunc(), and zoneDensity().

#define EXIT_SUCCESS ES_SUCCESS

Referenced by AGN_Hemis(), CoStarInterpolate(), diatomics::H2_Read_LTE_cooling_per_H2(), Parser::help(), diatomics::init(), InitEmissivities(), InitIndexArrays(), iso_recomb_setup(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), ParseCompile(), ParseInterp(), ParseTable(), read_UTA_lines(), RT_line_one_fine(), save_opacity(), SaveDo(), SaveLineData(), and test_isMolecule().

#define fixit ( a )

Value:

do { \
                static Fixit fixit_s(__func__,__FILE__,__LINE__, (a));  \
        } while (0)

Referenced by AbundChange(), atmdat_CHIANTI_readin(), ChargTranSumHeat(), clean_up(), ContCreatePointers(), CoolEvaluate(), create_isotopologues(), database_readin(), diatomics::diatomics(), DynaCreateArrays(), FndLineHt(), ForbiddenAuls(), GetAveVelocity(), GetDensity(), gridXspec(), H21_cm_pops(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_X_sink_and_source(), HeatSum(), HomogeneousSource(), diatomics::init(), init_struc(), IonHydro(), iso_cool(), iso_ionize_recombine(), iso_level(), iso_satellite(), lgNetEdenSrcSmall(), lines(), lines_helium(), lines_hydro(), t_mole_global::make_species(), mole_check_reverse_reactions(), mole_create_react(), mole_generate_isotopologue_reactions(), diatomics::mole_H2_form(), mole_h2_grain_form(), mole_h_reactions(), mole_partition_function(), mole_solve(), OpacityAddTotal(), OpacityCreateAll(), outline_base(), ParseCosmology(), ParseDatabaseH2(), PressureChange(), pressureZone(), PresTotCurrent(), PrtZone(), punchFITS_PrimaryHeader(), radius_next(), read_data(), Recomb_Seaton59(), renorm_solution(), RT_continuum(), RT_iso_integrate_RRC(), RT_line_all(), RT_line_escape(), RT_tau_init(), SaveLineIntensity(), SecIoniz(), set_fractionation(), setXtraRatesO1(), diatomics::SolveExcitedElectronicLevels(), states_nelemfill(), t_isoCTRL::zero(), and zoneDensity().

#define float PLEASE_USE_REALNUM_NOT_FLOAT

#define fopen PLEASE_USE_open_data_NOT_fopen

Referenced by main(), and sys_fopen().

#define isnan MyIsnan

Referenced by atmdat_LAMDA_readin(), DynaSaveLast(), DynaStartZone(), find_solution(), t_mole_local::findrk(), fp_bound(), fp_bound_tol(), fp_equal(), fp_equal_tol(), InterpCollRate(), OpacityAddTotal(), t_gaunt::p_read_table(), ParseCrashDo(), and safe_div().

#define lgBOUNDSCHECKVAL false

#define MAX2	(	a,
		b
	)	max(a,b)

MAX2 takes two arguments, returns the larger of the two

Referenced by abund_starburst(), AbundancesPrt(), AgeCheck(), atmdat_3body(), atmdat_CHIANTI_readin(), atmdat_STOUT_readin(), atom_level2(), avg_shield(), Badnell_rec_init(), badprt(), bhintegrand_log(), C6cs123(), Ca20cs123(), t_timesc::calc_therm_timesc(), cdColm(), cdTimescales(), ChargTranSumHeat(), chkCaHeps(), cloudy(), collision_strength_VF01(), ColStrGBar(), ContCreateMesh(), ContCreatePointers(), ContRate(), ContSetIntensity(), ConvBase(), ConvFail(), ConvInitSolution(), ConvPresTempEdenIoniz(), CoolAdd(), CoolEvaluate(), CoolSave(), CoStarListModels(), save_img_matrix::createImage_PPM(), cross_section(), CS_l_mixing_PS64(), CS_l_mixing_PS64_expI(), da(), dBase_solve(), DebyeDeriv(), DGEMM(), DGER(), DGETF2(), DGETRF(), DGETRS(), DTRSM(), DynaStartZone(), EdenChange(), ElectronFractions(), EvalJenkins(), Fe26cs123(), ffun1(), fstats(), GammaBn(), GammaK(), GbarRateCoeff(), GetFracPop(), diatomics::GetHeatRate(), GetHelikeCollisionStrength(), GetPotValues(), GetProbDistr_HighLimit(), GetProbDistr_LowLimit(), GrainCharge(), GrainChrgTransferRates(), GrainCollHeating(), GrainElecEmis1(), GrainElecRecomb1(), GrainMakeDiffuse(), GrainRateDr(), GrainsInit(), GrainTemperature(), diatomics::gs_rate(), h21_t_lt_10(), H21cm_proton(), diatomics::H2_LevelPops(), diatomics::H2_PunchDo(), diatomics::H2_ReadEnergies(), diatomics::H2_RT_tau_inc(), H_cross_section(), H_photo_cs_log10(), HCoolRatio(), HCTIon(), HCTRecom(), he_1trans(), HeatSum(), highen(), Hion_coll_ioniz_ratecoef(), HomogeneousSource(), t_ADfA::hpfit(), Hydcs123(), hydro_vs_coll_str(), HydroEinstA(), HydroLevel(), HyperfineCreate(), hypho(), init_struc(), InitBinAugerData(), InterpolateModel(), ion_photo(), ion_recomb(), ion_trim(), ion_trim2(), IonHydro(), iso_continuum_lower(), iso_cool(), iso_level(), iso_rad_rec_cooling_extra(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_radrecomb_from_cross_section(), iso_recomb_alloc(), iso_recomb_check(), iso_update_num_levels(), iter_end_check(), IterRestart(), lgCheckMonitors(), lgCoolHeatCheckConverge(), lgNucleiConserved(), limitedDensityScaling(), lincom(), lines(), lines_continuum(), lines_general(), lines_grains(), lines_hydro(), lines_molecules(), map_do(), molcol(), mole_effects(), mole_h_reactions(), Ne10cs123(), Opacity_iso_photo_cs(), OpacityAdd1Element(), OpacityAdd1SubshellInduc(), OpacityAddTotal(), OpacityCreate1Element(), Atom_LevelN::operator()(), optimize_subplex(), TransitionProxy::outline(), outline_base(), ParseGrid(), ParseIterations(), ParseMetal(), ParseRangeOption(), ParseSave(), ParseSet(), ParseStop(), ParseTrace(), PresTotCurrent(), PrintSpectrum(), PrtAllTau(), PrtColumns(), PrtHeader(), PrtOneMonitor(), PrtZone(), qheat(), qheat_init(), radius_first(), radius_increment(), radius_next(), rayleh(), RebinQHeatResults(), RT_continuum(), RT_DestProb(), RT_diffuse(), RT_iso_integrate_RRC(), RT_line_electron_scatter(), RT_line_one_fine(), RT_line_one_tau_reset(), RT_LineWidth(), RT_OTS(), RT_OTS_Update(), RT_recom_effic(), RT_stark(), RT_tau_init(), RTesc_lya(), RTesc_lya_1side(), SanityCheckBegin(), save_opacity(), SaveDo(), saveFITSfile(), SaveSpecies(), ScanProbDistr(), SecIoniz(), set_xIntensity(), SetLimits(), SetLimitsSub(), setstp(), setXtraRatesFe2(), setXtraRatesO1(), shieldFederman(), spldrv_safe(), splint_safe(), pseudo_cont::sumBand(), band_emission::sumBand(), tauff(), TryDoubleStep(), TwoPhotonSetup(), uderiv(), UpdatePot(), UpdatePot1(), Yan_H2_CS(), and ZoneStart().

#define MAX3	(	a,
		b,
		c
	)	(max(max(a,b),c))

MAX3 takes 3 arguments, returns the largest of the 3

Referenced by fstats(), and GetProbDistr_LowLimit().

#define MAX4	(	a,
		b,
		c,
		d
	)	(max(max(a,b),max(c,d)))

MAX4 takes 4 arguments, returns the largest of the 4

Referenced by QN2ind(), and sinpar().

#define MESSAGE_ASSERT	(	msg,
		exp
	)	ASSERT( (msg) ? (exp) : false )

#define MIN2	(	a,
		b
	)	min(a,b)

MIN2 takes two arguments, returns the smaller of the two

Referenced by abund_starburst(), AgeCheck(), atmdat_3body(), atmdat_CHIANTI_readin(), atmdat_STOUT_readin(), C6cs123(), Ca20cs123(), t_timesc::calc_therm_timesc(), ChargTranEval(), ChargTranSumHeat(), ContRate(), ContSetIntensity(), ConvBase(), ConvFail(), ConvInitSolution(), ConvIterCheck(), ConvPresTempEdenIoniz(), CoolEvaluate(), coolpr(), save_img_matrix::createImage_PPM(), CS_l_mixing_PS64(), CS_l_mixing_PS64_expI(), da(), dBase_solve(), dense_parametric_wind(), DGETF2(), DGETRF(), DynaStartZone(), ElectronFractions(), esc_CRDcore(), esc_PRD_1side(), EvalJenkins(), Fe26cs123(), ffun1(), fill_array(), FillJ(), ForbiddenAuls(), fstats(), GammaBn(), GammaK(), GammaPrt(), GetDissociationRateCoeff(), diatomics::GetHeatRate(), GetProbDistr_HighLimit(), GetProbDistr_LowLimit(), GrainScreen(), GrainTemperature(), h21_t_ge_10(), H21cm_electron(), H21cm_proton(), diatomics::H2_PunchDo(), diatomics::H2_ReadEnergies(), diatomics::H2_RT_tau_inc(), HCoolRatio(), HCTIon(), HCTRecom(), HeatSum(), highen(), Hion_coll_ioniz_ratecoef(), Hydcs123(), HydroEinstA(), hypho(), ILAENV(), InterpolateModel(), ion_collis(), ion_CX(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_solver(), ion_trim(), ion_trim2(), iso_assign_quantum_numbers(), iso_collapsed_update(), iso_collide(), iso_continuum_lower(), iso_cool(), iso_ionize_recombine(), iso_level(), iso_Max_Emitting_Level(), iso_radiative_recomb(), iso_radrecomb_from_cross_section(), iso_satellite_update(), iso_update_rates(), lgCheckMonitors(), limitedDensityScaling(), lines_hydro(), map_do(), mole_get_equilibrium_condition(), my_Integrand_VF01_E::my_Integrand_VF01_E(), Ne10cs123(), newton_step(), OpacityAdd1Subshell(), OpacityAdd1SubshellInduc(), OpacityAddTotal(), OpacityCreateAll(), outline_base(), phymir_state< X, Y, NP, NSTR >::p_setup_next_hyperblock(), ParseCommands(), ParseCosmicRays(), ParseDatabaseISO(), ParseRangeOption(), ParseSave(), ParseSet(), ParseStop(), partx(), PressureRadiationLine(), PresTotCurrent(), PrintSpectrum(), prt_smooth_predictions(), PrtComment(), PrtLinePres(), PrtMeanIon(), qheat(), qheat_init(), radius_first(), radius_increment(), radius_next(), read_SH98_He1_cross_sections(), RebinQHeatResults(), RebinSingleCell(), RT_continuum_shield_fcn_point(), RT_diffuse(), RT_line_one_fine(), RT_line_one_tau_reset(), RT_line_one_tauinc(), RT_LineWidth(), RT_recom_effic(), RT_stark(), RT_tau_init(), RTesc_lya(), RTesc_lya_1side(), SanityCheckBegin(), save_opacity(), SaveDo(), SaveLineData(), SecIoniz(), set_xIntensity(), SetLimits(), SetLimitsSub(), setstp(), setXtraRatesO1(), shieldFederman(), simplx(), spldrv_safe(), splint_safe(), subopt(), sumcon(), uderiv(), xinvrs(), and ZoneStart().

#define MIN3	(	a,
		b,
		c
	)	(min(min(a,b),c))

MIN3 takes 3 arguments, returns the smallest of the 3

Referenced by atmdat_3body(), atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), iso_continuum_lower(), LevenshteinDistance(), ParseCommands(), and radius_first().

#define MIN4	(	a,
		b,
		c,
		d
	)	(min(min(a,b),min(c,d)))

MIN4 takes 4 arguments, returns the smallest of the 4

Referenced by radius_first().

#define NULL nullptr

Referenced by multi_arr< StoutColls, 2 >::alloc(), flex_arr< double >::alloc(), append_file(), genericState::associated(), TransitionProxy::associated(), ProxyIterator< P, C >::associated(), TransitionConstProxy::associated(), qStateProxy::associated(), qStateConstProxy::associated(), atmdat_CHIANTI_readin(), t_avx_pool::avx_alloc(), t_avx_pool::avx_free(), avx_ptr< T, lgBC >::avx_ptr(), bad_assert::bad_assert(), basic_pntr< T, lgBC >::basic_pntr(), cdBacktrace(), cdInput(), cdMain(), cdOutput(), cdRead(), cdSPEC2(), check_data(), check_mult_path(), t_mole_local::chem_heat(), ChemImportance(), CloseSaveFiles(), Parser::ClosestMatch(), cloudy_abort::cloudy_abort(), column(), ConvBase(), CoStarInitialize(), d3_np_fs(), multi_arr< StoutColls, 2 >::data(), genericState::database(), dBase_solve(), density(), depart(), DOMAIN_ERROR(), DynaStartZone(), EdenChange(), EdenError(), ElectronFractions(), multi_arr< StoutColls, 2 >::empty(), energy(), load_balance::finalize(), find_solution(), findnuclide(), flxCell(), GridGatherOutputParallel(), GridGatherOutputSequential(), Parser::help(), Parser::init(), load_balance::init(), molezone::init(), phymir_state< X, Y, NP, NSTR >::init_strings(), InitGrid(), t_cpu_i::initPath(), drList::insert(), insertToken(), InterpolateGridCoStar(), InterpolateModel(), InterpolateRectGrid(), isCatalystProduct(), isCatalystReactant(), isCreated(), isDestroyed(), iso_recomb_setup(), genericState::isSpecies(), isSpeciesActive(), iter_end_check(), IterStart(), KhaireSrianandInterpolate(), genericState::label(), levels(), lgCheckMonitors(), lgCompileAtmosphere(), lgFileReadable(), lgReadAtmosphereTail(), lgValidIdxFile(), lincom(), t_mole_global::make_species(), mie_read_opc(), molcol(), mole_check_reverse_reactions(), mole_dominant_rates(), mole_eval_balance(), mole_eval_sources(), mole_findrate_s(), mole_print_species_reactions(), mole_return_cached_species(), mole_update_species_cache(), newreact(), newspecies(), nMatch(), Parser::nMatch1(), nWord(), diatomics::OpacityCreate(), open_data(), Atom_LevelN::operator()(), tree_vec::operator=(), flex_arr< double >::operator=(), n_pointer< T, N, ARPA_TYPE, true >::operator[](), const_n_pointer< T, N, ARPA_TYPE, true >::operator[](), optimize_phymir(), OUT_OF_RANGE(), avx_ptr< T, lgBC >::p_alloc(), phymir_state< X, Y, NP, NSTR >::p_barrier(), tree_vec::p_clear0(), flex_arr< double >::p_clear0(), phymir_state< X, Y, NP, NSTR >::p_clear1(), tree_vec::p_clear1(), multi_arr< StoutColls, 2 >::p_clear1(), flex_arr< double >::p_clear1(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), phymir_state< X, Y, NP, NSTR >::p_execute_job_parallel(), multi_arr< StoutColls, 2 >::p_iterator_bc(), ran_pool< uint8 >::p_update_pool(), phymir_state< X, Y, NP, NSTR >::p_wr_state(), parse_reaction(), parse_species_label(), parse_udfa(), ParseCommands(), ParseDatabaseH2(), ParseGrain(), ParseMap(), ParseMonitorResults(), ParseSpecies(), ParseTable(), plot_sparsity(), PrtComment(), PutLine(), qheat(), radius_increment(), ran_pool< uint8 >::ran_pool(), RauchInitialize(), read_UTA_lines(), read_whole_line(), flex_arr< double >::realloc(), register_reaction_vectors(), multi_geom< d, MEM_LAYOUT_VAL >::reserve(), flex_arr< double >::reserve(), RT_line_all_escape(), RT_tau_init(), SaveAllSpeciesLabelsLevels(), SaveFilesInit(), SaveGrid(), SaveSpecies(), SaveSpeciesLines(), SaveSpeciesOptDep(), t_mole_local::set_isotope_abundances(), t_cpu_i::set_signal_handlers(), ShowMe(), t_mole_local::sink_rate(), solve_system(), t_mole_local::source_rate_tot(), species::species(), spldrv(), spline_cubic_set(), spline_cubic_val(), splint(), stellar_grid::stellar_grid(), pseudo_cont::sumBand(), band_emission::sumBand(), t_collider::t_collider(), t_cpu_i::t_cpu_i(), t_dense::t_dense(), tbl_fun(), total_molecule_deut(), total_molecule_elems(), total_molecules(), total_molecules_gasphase(), TotalInsanity(), two_photon::two_photon(), UpdatePot1(), VHstream(), writeCloudyDetails(), Yfunc(), avx_ptr< T, lgBC >::~avx_ptr(), and stellar_grid::~stellar_grid().

#define POW2 pow2

POW2 takes 1 argument, and squares it

Referenced by abund_starburst(), collision_strength_VF01(), ColStrGBar(), ConserveEnergy(), ContSetIntensity(), CS_l_mixing_PS64(), CS_l_mixing_S62(), dist(), DynaIonize(), DynaNewStep(), DynaPrtZone(), DynaStartZone(), eina(), esc_CRDwing_1side(), FillExtraLymanLine(), ForbiddenAuls(), fstats(), gbar0(), gbar1(), GetAveVelocity(), GetDopplerWidth(), GetGF(), GetHelikeCollisionStrength(), GetHubbleFactor(), gett2(), gett2o3(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainScreen(), GrainsInit(), GravitationalPressure(), diatomics::H2_Cooling(), H2_vib_dist(), t_ADfA::H_rad_rec(), helike_energy(), t_ADfA::hpfit(), hydro_energy(), hydro_Fujimoto_deexcit(), hydro_vs_coll_str(), HydroEinstA(), HydroOscilStr(), HydroRecCool(), hypho(), diatomics::init(), InitSimPostparse(), iso_assign_quantum_numbers(), iso_cool(), iso_rad_rec_cooling_approx(), iso_rad_rec_cooling_extra(), iso_state_lifetime(), lgCheckMonitors(), lgReadAtmosphereTail(), lines(), lines_hydro(), lines_setup(), Magnetic_evaluate(), mole_effects(), mole_h2_grain_form(), mole_h_reactions(), my_Integrand_VF01_E::my_Integrand_VF01_E(), ofit(), OpacityCreateAll(), my_Integrand_S62::operator()(), optimize_subplex(), t_ADfA::phfit(), PlanckIntegral(), plankf(), PresTotCurrent(), PrtFinal(), radius_first(), rayleh(), RT_continuum(), RT_DestProb(), RT_fine_clear(), RTesc_lya_1side(), SaveDo(), shieldFederman(), sum_radiation(), tfidle(), ThetaNu(), UpdatePot1(), UpdatePot2(), zoneDensity(), and ZoneStart().

#define POW3 pow3

POW3 takes 1 argument, and cubes it

Referenced by abund_starburst(), ContSetIntensity(), cross_section(), ffun1(), GetHS98CrossSection(), GetHubbleFactor(), GrainDrift(), GravitationalPressure(), HydroOscilStr(), HydroRecCool(), iso_rad_rec_cooling_extra(), my_Integrand_VF01_E::my_Integrand_VF01_E(), OpacityCreateAll(), ParseDatabaseISO(), and save_opacity().

#define POW4 pow4

POW4 takes 1 argument, and raises it to the power 4

Referenced by ConvTempEdenIoniz(), GetHubbleFactor(), mie_write_opc(), PressureRadiationLine(), search_limit(), and size_distr().

#define PrintEfmt	(	F,
		V
	)	F, V

create string with val and format, to print with %s,

much faster than above, totally native on non-MS systems

Parameters

*fmt
val

Referenced by EchoModel(), GammaPrt(), diatomics::H2_Prt_Zone(), HydroLevel(), InterpolateGridCoStar(), InterpolateRectGrid(), iso_collide(), iso_level(), iso_photo(), iso_radiative_recomb(), map_do(), PrintRatio(), PrtAllTau(), PrtFinal(), PrtHeader(), PrtHydroTrace1(), PrtZone(), RT_tau_init(), and Save1LineData().

#define puts ( STR ) Using_puts_before_cdEXIT_is_no_longer_needed

#define STATIC static

Typedef Documentation

typedef float realnum

typedef float sys_float

Enumeration Type Documentation

anonymous enum

Enumerator
CHARS_SPECIES

anonymous enum

Enumerator
CHARS_ISOTOPE_SYM

enum exit_type

Enumerator
ES_SUCCESS
ES_FAILURE
ES_WARNINGS
ES_BOTCHES
ES_CLOUDY_ABORT
ES_BAD_ASSERT
ES_BAD_ALLOC
ES_OUT_OF_RANGE
ES_DOMAIN_ERROR
ES_ILLEGAL_INSTRUCTION
ES_FP_EXCEPTION
ES_SEGFAULT
ES_BUS_ERROR
ES_UNKNOWN_SIGNAL
ES_UNKNOWN_EXCEPTION
ES_TOP

Function Documentation

double AnuUnit ( realnum energy )

AnuUnit produce continuum energy in arbitrary units, ip is on C scale

References t_save::chConSavEnr, DEBUG_ENTRY, Energy::get(), t_save::ipConPun, and save.

Referenced by AGN_Hemis(), energy(), pseudo_cont::getWl(), Save1Line(), Save1LineData(), save_opacity(), and SaveDo().

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NORETURN void BadRead ( void )

BadRead tried to read internal data and failed

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, and ShowMe().

Referenced by diatomics::H2_Read_hminus_distribution().

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void broken ( void )

broken set flag saying that the code is broken

References broke, DEBUG_ENTRY, and t_broke::lgBroke.

Referenced by ion_solver(), and PresTotCurrent().

void cap4	(	char *	chCAP,
		const char *	chLab
	)

cap4 convert first 4 char of input line chLab into chCAP all in caps, null termination

Parameters

chCAP	output string, cap'd first 4 char of chLab,
chLab	with null terminating input string ending with eol

References DEBUG_ENTRY, and toupper().

Referenced by lgCheckMonitors(), and PrtFinal().

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void caps ( char * chCard )

caps convert input command line (through eol) to ALL CAPS

Parameters

chCard - line image as string of characters

References DEBUG_ENTRY, and toupper().

Referenced by cdColm(), cdIonFrac(), cdTemp(), LinSv::chALabSet(), t_LineSave::findline(), Parser::getElement(), GetJenkins09(), DataParser::getKeywordOptional(), GetMetalsDeplete(), lgCheckMonitors(), LinSv::makeBlend(), Parser::newlineProcess(), ParseAbundances(), ParseNorm(), Parser::peekNextCommand(), and set_weighting().

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void caps ( string & chCard )

References DEBUG_ENTRY, and toupper().

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void cdBacktrace ( )

inline

cdBacktrace – print backtrace and continue executing normally

References cpu, t_cpu_i::GenerateBacktrace(), t_cpu::i(), NULL, and t_cpu_i::PrintBacktrace().

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void cdPrepareExit ( exit_type )

prepare termination of the code, but do not terminate yet

References cdInput(), cdOutput(), CloseSaveFiles(), cpu, fprintf(), grid, t_cpu::i(), ioQQQ, t_save::ipSaveGrid, t_grid::lgGrid, t_trace::lgTrace, t_cpu_i::MPIMode(), MS_GRID, t_grid::pnunit, save, SaveGrid(), and trace.

Referenced by cdMain().

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void CodeReview ( void )

CodeReview - placed next to code that needs to be checked

References broke, DEBUG_ENTRY, and t_broke::lgCheckit.

double csphot	(	long int	inu,
		long int	ithr,
		long int	iofset
	)

csphot returns photoionization cross section from opacity stage using std pointers

Parameters

inu	INU is array index pointing to frequency where opacity is to be evaluated on f not c scale
ithr	ITHR is pointer to threshold
iofset	IOFSET is offset as defined in opac0

References DEBUG_ENTRY, opac, and t_opac::OpacStack.

Referenced by OpacityAddTotal().

int dbg_printf	(	int	debug,
		const char *	fmt,
			...
	)

dbg_printf is a debug print routine that was provided by Peter Teuben, as a component from his NEMO package. It offers run-time specification of the level of debugging

References DEBUG_ENTRY, t_trace::debug_level, ioQQQ, and trace.

NORETURN void DOMAIN_ERROR ( const string & str )

inline

References cpu, t_cpu_i::GenerateBacktrace(), t_cpu::i(), and NULL.

Referenced by bessel_k0(), bessel_k0_k1(), bessel_k0_k1_scaled(), bessel_k0_scaled(), bessel_k1(), bessel_k1_scaled(), and RandomCrash().

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int dprintf	(	FILE *	fp,
		const char *	format,
			...
	)

dprintf – version of fprintf which prepends DEBUG

References DEBUG_ENTRY, and fprintf().

Referenced by DumpCoolStack(), DumpHeatStack(), iso_radiative_recomb_effective(), iter_track::print_status(), qheat_init(), read_UTA_lines(), and Recomb_Seaton59().

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int dprintf	(	const Output &	stream,
		const char *	format,
			...
	)

References DEBUG_ENTRY, fprintf(), and Output::fptr().

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double dsexp ( double x )

dsexp safe exponential function for doubles

Parameters

x

References DEBUG_ENTRY, and DSEXP_LIMIT.

Referenced by FastVoigtH(), ga08_oH2_e(), ga08_oH2_H_b100(), ga08_pH2_e(), ga08_pH2_H_b100(), diatomics::H2_Level_low_matrix(), Hion_coll_ioniz_ratecoef(), hydro_vs_ioniz(), iso_satellite_update(), diatomics::mole_H2_LTE(), mole_partition_function(), setCollRate::operator()(), RT_continuum_shield_fcn_point(), RT_recom_effic(), and diatomics::SolveSomeGroundElectronicLevels().

double exp10 ( double x )

inline

exp10(x): faster alternative to pow(10.,x)

References BIGDOUBLE, and pow2().

Referenced by AbundancesTable(), atmdat_HS_caseB(), Badnell_rec_init(), cdIonFrac(), cdRead(), cdTemp(), CHIANTI_Upsilon(), ColStrGBar(), conorm(), ContCreatePointers(), ContSetIntensity(), CoolEvaluate(), CoStarInitialize(), CoStarListModels(), da(), dense_fabden(), ffun1(), GbarRateCoeff(), GetHelikeCollisionStrength(), Parser::getNumberCheckAlwaysLog(), Parser::getNumberCheckAlwaysLogLim(), Parser::getNumberCheckLogLinNegImplLog(), Parser::getNumberDefaultAlwaysLog(), Parser::getNumberDefaultNegImplLog(), GetOptColDen(), GetOptTemp(), H21cm_electron(), diatomics::H2_LevelPops(), diatomics::H2_Read_hminus_distribution(), t_ADfA::H_rad_rec(), hrii_log(), hydro_vanRegemorter_deexcit(), HydroRecCool(), HyperfineCS(), hypho(), InitEmissivities(), InterpolateGridCoStar(), InterpolateRectGrid(), iso_dielec_recomb_rate(), iso_rad_rec_cooling_extra(), iso_recomb_setup(), iso_RRCoef_Te(), lines(), lines_helium(), lines_hydro(), map_do(), mole_effects(), mxify_log10(), optimize_func(), pah2_fun(), pah3_fun(), ParseAbundances(), ParseAge(), ParseAgn(), ParseBlackbody(), ParseBremsstrahlung(), ParseCaseB(), ParseCExtra(), ParseConstant(), ParseCoronal(), ParseCosmicRays(), ParseCovering(), ParseCylinder(), ParseDatabaseH2(), ParseDatabaseISO(), ParseDistance(), ParseEden(), ParseElement(), ParseExtinguish(), ParseF_nu(), ParseFill(), ParseFluc(), ParseForceTemperature(), ParseGlobule(), ParseGrain(), ParseGravity(), ParseHDEN(), ParseHExtra(), ParseInterp(), ParseLaser(), ParseMap(), ParseMetal(), ParseMonitorResults(), ParseNeutrons(), ParseOptimize(), ParsePowerlawContinuum(), ParsePrint(), ParseRadius(), ParseRangeOption(), ParseRatio(), ParseSet(), ParseStop(), ParseTable(), ParseTauMin(), ParseTurbulence(), PrintE71(), PrintE82(), PrintE93(), prt_smooth_predictions(), PrtComment(), PrtFinal(), PrtHeader(), punchFITS_ParamData(), radius_first(), radius_next(), resetBltin(), RTesc_lya_1side(), S62BesselInvert(), SanityCheckGaunt(), SaveDo(), SaveGaunts(), SetLimits(), pseudo_cont::setup(), StarburstInitialize(), DepthTable::tabval(), uderiv(), vexp10(), WavlenErrorGet(), wr_exp10d(), wr_exp10f(), and xinvrs().

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sys_float exp10 ( sys_float x )

inline

References exp10f().

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sys_float exp10f ( sys_float x )

inline

exp10f(x): single precision version of exp10(x)

References BIGFLOAT, and pow2().

Referenced by exp10(), and diatomics::init().

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double FFmtRead	(	const char *	chCard,
		long int *	ipnt,
		long int	last,
		bool *	lgEOL
	)

FFmtRead - the free-format number reader

Parameters

*chCard	string giving the line image
*ipnt	the index for the character in the string where we shall start
last	the number of characters in the string - do not search beyond it
*lgEOL	true if hit end of line with no number

References DEBUG_ENTRY, fprintf(), ioQQQ, max_pow10, min(), min_pow10, pos_pow10, sign(), tolower(), and TotalInsanity().

Referenced by atmdat_LAMDA_readin(), Badnell_rec_init(), ContBandsCreate(), diatomics::GetIndices(), GetJenkins09(), GetMetalsDeplete(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), HyperfineCreate(), iso_recomb_setup(), bands_file::load(), LoadIsotopes(), FunctLAMDA::operator()(), t_mesh::p_ReadResolution(), ParseAbundances(), read_Helike_cross_sections(), read_SH98_He1_cross_sections(), and ReadCollisionRateTable().

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void fixit_base	(	const char *	func,
		const char *	file,
		int	line,
		const char *	reason
	)

fixit set flag saying that this code needs attention, but is not broken, code is in service.cpp

References broke, DEBUG_ENTRY, Singleton< FixitList >::Inst(), t_broke::lgFixit, and FixitList::list.

Referenced by Fixit::Fixit().

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bool fp_bound	(	sys_float	lo,
		sys_float	x,
		sys_float	hi,
		int	n = `3`
	)

inline

checks whether a number is within bounds

References ASSERT, fp_equal(), and isnan.

Referenced by DynaStartZone().

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bool fp_bound	(	double	lo,
		double	x,
		double	hi,
		int	n = `3`
	)

inline

References ASSERT, fp_equal(), and isnan.

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bool fp_bound_tol	(	sys_float	lo,
		sys_float	x,
		sys_float	hi,
		sys_float	tol
	)

inline

References ASSERT, fp_equal_tol(), and isnan.

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bool fp_bound_tol	(	double	lo,
		double	x,
		double	hi,
		double	tol
	)

inline

References ASSERT, fp_equal_tol(), and isnan.

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bool fp_equal	(	sys_float	x,
		sys_float	y,
		int	n = `3`
	)

inline

checks whether two FP numbers are "equal" (differ no more than n epsilon)

References ASSERT, isnan, max(), min(), and sign3().

Referenced by abund_starburst(), Spectrum::accumulate_flux(), atmdat_HS_caseB(), t_gaunt::brems_cool(), ChargTranEval(), LinSv::checkEmergent(), t_mesh::CheckMesh(), conorm(), phymir_state< X, Y, NP, NSTR >::continue_from_state(), ConvBase(), ConvEdenIoniz(), ConvInitSolution(), ConvTempEdenIoniz(), CoolEvaluate(), CoolHyperfine(), CoStarInitialize(), dBase_solve(), eden_sum(), EdenChange(), eeBremsSpectrum(), ffun1(), t_PredCont::find(), FindIndex(), t_LineSave::findline(), fp_bound(), GammaBn(), GrainChargeTemp(), GrainDrive(), diatomics::H2_LevelPops(), diatomics::H2_X_coll_rate_evaluate(), HeatSum(), Hydcs123(), InterpolateModel(), ion_recom_calculate(), iso_collide(), iso_level(), iso_rad_rec_cooling_discrete(), iso_radiative_recomb(), iso_renorm(), lgCheckMonitors(), MeanMassOfElement(), mie_cs_size_distr(), diatomics::mole_H2_LTE(), mole_h_reactions(), NewChargeData(), OpacityAddTotal(), optimize_subplex(), t_gaunt::p_gauntff_vec(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), t_gaunt::p_setup_brems(), ParseGrid(), PrtFinal(), radius_first(), RauchInitialize(), RT_DestProb(), SanityCheckBegin(), SaveDo(), SearchModel(), t_mesh::setResolutionScaleFactor(), diatomics::SolveSomeGroundElectronicLevels(), StarburstInitialize(), t_physconst::t_physconst(), and tfidle().

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bool fp_equal	(	double	x,
		double	y,
		int	n = `3`
	)

inline

References ASSERT, isnan, max(), min(), and sign3().

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bool fp_equal_tol	(	sys_float	x,
		sys_float	y,
		sys_float	tol
	)

inline

References ASSERT, isnan, and max().

Referenced by fp_bound_tol(), get_total_abundance_ions(), diatomics::H2_LevelPops(), mie_read_opc(), diatomics::mole_H2_form(), diatomics::mole_H2_LTE(), TransitionProxy::outline(), t_mesh::p_ReadResolution(), read_UTA_lines(), and ReadTable().

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bool fp_equal_tol	(	double	x,
		double	y,
		double	tol
	)

inline

References ASSERT, isnan, and max().

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int fprintf	(	const Output &	stream,
		const char *	format,
			...
	)

overloads to allow interception of output

References Output::fptr().

Referenced by abund_starburst(), AbundancesPrt(), AbundancesSet(), AbundancesTable(), t_PredCont::add(), addComment(), LinSv::addComponent(), LinSv::addComponentID(), addKeyword_dbl(), addKeyword_num(), addKeyword_txt(), AGN_He1_CS(), AGN_Hemis(), AtlasCompile(), atmdat_3body(), atmdat_CHIANTI_readin(), atmdat_dielrec_fe(), atmdat_LAMDA_readin(), atmdat_outer_shell(), atmdat_readin(), atmdat_STOUT_readin(), AtmospheresAvail(), Badnell_rec_init(), badprt(), BadRead(), bessel_y0(), bessel_y1(), bessel_yn(), C6cs123(), Ca20cs123(), cdCautions(), cdClock(), cdColm(), cdDrive(), cdErrors(), cdExecTime(), cdGetLineList(), cdH2_colden(), cdInit(), cdInput(), cdIonFrac(), cdLine_ip(), cdMain(), cdMemory(), cdNotes(), cdPrepareExit(), cdPrintCommands(), cdRead(), cdReasonGeo(), cdSPEC2(), cdSurprises(), cdTemp(), cdWarnings(), ChargTranPun(), ChargTranSumHeat(), check_data(), pseudo_cont::check_index_fatal(), band_emission::check_index_fatal(), check_LAMDA_comment(), check_mult_path(), t_mesh::CheckMesh(), CheckVal(), t_mole_local::chem_heat(), ChemImportance(), chi2_func(), CHIANTI_Upsilon(), chkCaHeps(), chMolBranch(), CloseSaveFiles(), cloudy(), CloudyPrintReference(), cnewton(), t_ADfA::coll_ion_wrapper(), collision_strength_VF01(), CollisSuppres(), Parser::CommandError(), conorm(), ConserveEnergy(), ContBandsCreate(), ContCreateMesh(), ContCreatePointers(), ContNegative(), ContRate(), ContSetIntensity(), ConvBase(), ConvCrossSect2CollStr(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvIoniz(), ConvIterCheck(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolEvaluate(), CoolHeatError(), CoolHyperfine(), coolpr(), CoolSave(), CoolSum(), CoStarCompile(), CoStarInitialize(), CoStarListModels(), save_img_matrix::createImage_PPM(), CS_l_mixing(), database_readin(), DatabasePrintReference(), dBase_solve(), dBaseAbund(), dmpary(), doData(), doHeader(), doop(), Parser::doSetVar(), dprintf(), DumpAtmosphere(), DumpLine(), DynaEndZone(), DynaIonize(), DynaIterEnd(), DynaIterStart(), DynaNewStep(), DynaPrtZone(), DynaPunchTimeDep(), DynaSave(), DynaStartZone(), e1(), e1_scaled(), e2(), t_input::echo(), Parser::echo(), EchoModel(), eden_sum(), EdenError(), ElectronFractions(), ellpk(), t_debug::enter(), Parser::Error(), DataParser::errorAbort(), ErrorMessage(), esc_2side_base(), esc_CRDwing(), escmase(), expn(), extractLevels(), factorial(), fc2_scl(), Fe26cs123(), Parser::FFmtRead(), FFmtRead(), ffun(), ffun1(), FillExtraLymanLine(), FillJ(), find_arr(), find_solution(), t_LineSave::findline(), findspecies_validate(), fndneg(), fndstr(), fudge(), funjac(), GammaPrt(), GammaPrtRate(), GammaPrtShells(), gauss_legendre(), Energy::get(), get_total_abundance_ions(), Parser::getElement(), Parser::getFirstChunk(), Parser::getFirstChunkRaw(), GetFracPop(), GetHelikeCollisionStrength(), GetHlikeCollisionStrength(), band_cont::getInten(), GetJenkins09(), getLevelsGeneric(), Parser::getLineID(), GetLineRec(), GetMetalsDeplete(), Parser::getNumberCheckAlwaysLogLim(), GetOptColDen(), GetOptLineInt(), GetOptTemp(), Parser::getPairs(), t_cpu_i::getPathList(), GetPotValues(), GetProbDistr_HighLimit(), GetProbDistr_LowLimit(), getSpeciesGeneric(), Parser::getSymbol(), getTransition(), diatomics::GetXColden(), GrainCharge(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainDrive(), GrainsInit(), GrainTemperature(), GravitationalPressure(), grid_do(), GridCompile(), GridRetrieveXSPECData(), gridXspec(), GrnStdDpth(), GrnVryDpth(), H21_cm_pops(), diatomics::H2_Colden(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_CollidRateRead(), diatomics::H2_Cooling(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_ParseSave(), diatomics::H2_Prt_column_density(), diatomics::H2_Prt_Zone(), diatomics::H2_PrtDepartCoef(), diatomics::H2_Punch_line_data(), diatomics::H2_PunchDo(), diatomics::H2_RadPress(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_Read_LTE_cooling_per_H2(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), diatomics::H2_Reset(), diatomics::H2_X_coll_rate_evaluate(), H_Einstein_A_log10(), H_photo_cs_log10(), HaardtMadauCompile(), HCSAR_interp(), HCTIon(), HCTRecom(), He2cs123(), he_1trans(), HeatSum(), helike_energy(), Parser::help(), highen(), HomogeneousSource(), t_ADfA::hpfit(), Hydcs123(), hydro_energy(), HydroEinstA(), HydroLevel(), HydroRecCool(), HyperfineCreate(), hypho(), IncidentContinuumHere(), load_balance::init(), diatomics::init(), t_mole_global::init(), t_yield::init_yield(), InitEmissivities(), InitGrid(), InitIndexArrays(), InitSimPostparse(), InterpolateGridCoStar(), InterpolateModel(), InterpolateModelCoStar(), InterpolateRectGrid(), inv_ufunct(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_recombAGN(), ion_trim(), ion_trim2(), ion_wrapper(), IonHelium(), IonHydro(), IonNelem(), ipContEnergy(), ipLineEnergy(), ipoint(), ipShells(), iso_cascade(), iso_collide(), iso_continuum_lower(), iso_cool(), iso_create(), iso_get_collision_strength(), iso_ionize_recombine(), iso_level(), iso_photo(), iso_prt_pops(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_recomb_setup(), iso_renorm(), iso_set_ion_rates(), iso_solve(), iso_update_num_levels(), iter_end_check(), IterEnd(), IterRestart(), IterStart(), KhaireSrianandCompile(), Kurucz79Compile(), t_debug::leave(), lfactorial(), lgCheckMonitors(), lgCompileAtmosphere(), lgConvTemp(), lgCoolNetConverge(), lgElemsConserved(), lgNetEdenSrcSmall(), lgNucleiConserved(), lgReactBalance(), lgReadAtmosphereHead(), lgReadAtmosphereTail(), lgStatesConserved(), lgValidModel(), LimitSh(), lindst(), lines(), lines_continuum(), lines_general(), lines_helium(), lines_hydro(), lines_iron_Ka(), lines_table(), LineStackCreate(), bands_file::load(), LoadIsotopes(), main(), LinSv::makeBlend(), MakeInputLine(), map_do(), maybeNumber(), mc_escape(), t_mean::MeanIon(), mie_auxiliary(), mie_cs(), mie_find_slope(), mie_next_line(), mie_read_double(), mie_read_long(), mie_read_mix(), mie_read_ocn(), mie_read_opc(), mie_read_realnum(), mie_read_rfi(), mie_read_szd(), mie_repair(), mie_step(), mie_write_opc(), MihalasCompile(), molcol(), mole_check_reverse_reactions(), mole_cmp_num_in_out_reactions(), mole_create_react(), mole_dominant_rates(), mole_eval_balance(), mole_generate_isotopologue_reactions(), mole_h2_grain_form(), diatomics::mole_H2_LTE(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_print_species_reactions(), mole_rk_bigchange(), mole_save(), mole_solve(), mole_system_error(), mole_update_rks(), mole_update_species_cache(), my_Integrand_VF01_E::my_Integrand_VF01_E(), MyAssert(), Ne10cs123(), newreact(), newspecies(), newton_step(), Parser::NoNumb(), OpacityAddTotal(), OpacityCreate1Element(), OpacityCreateAll(), OpacityCreateReilMan(), setCollRate::operator()(), Atom_LevelN::operator()(), FunctLAMDA::operator()(), optimize_do(), optimize_func(), optimize_phymir(), t_cpu_i::p_assertValidPath(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), Flux::p_InternalFluxUnit(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), EnergyEntry::p_set_ip(), t_mesh::p_SetupMesh(), DataParser::p_showLocation(), parse_chemical(), parse_reaction(), parse_save_average(), Parse_Save_Line_RT(), parse_species_label(), parse_udfa(), ParseAbsMag(), ParseAbundances(), ParseAge(), ParseAgn(), ParseAperture(), ParseBackgrd(), ParseBlackbody(), ParseBremsstrahlung(), ParseChemistry(), ParseCMB(), ParseCommands(), ParseCompile(), ParseConstant(), ParseCoronal(), ParseCosmicRays(), ParseCosmology(), ParseCovering(), ParseCrashDo(), ParseDarkMatter(), ParseDatabase(), ParseDatabaseH2(), ParseDatabaseISO(), ParseDielectronic(), ParseDiffuse(), ParseDLaw(), ParseDont(), ParseDynaTime(), ParseDynaWind(), ParseElement(), ParseEnergy(), ParseExtinguish(), ParseF_nu(), ParseFail(), ParseFill(), ParseFluc(), ParseForceTemperature(), ParseGlobule(), ParseGrain(), ParseGravity(), ParseGrid(), ParseHDEN(), ParseHeLike(), ParseHExtra(), ParseHydrogen(), ParseIlluminate(), ParseInit(), ParseIntensity(), ParseInterp(), ParseIonPar(), ParseLaser(), ParseLineList(), ParseLuminosity(), ParseMagnet(), ParseMap(), ParseMetal(), ParseMonitorResults(), ParseNorm(), ParseNumber(), ParseOptimize(), ParsePGrains(), ParsePhi(), ParsePowerlawContinuum(), ParsePrint(), ParseQH(), ParseRadius(), ParseRangeOption(), ParseRatio(), ParseSave(), ParseSet(), ParseSpecies(), ParseSphere(), ParseStop(), ParseTable(), ParseTLaw(), ParseTolerance(), ParseTrace(), ParseTurbulence(), PlanckIntegral(), plot_sparsity(), pnegopc(), PntForLine(), PressureChange(), PresTotCurrent(), bad_assert::print(), print_delimiter(), print_emline_fine(), iter_track::print_history(), t_cpu_i::PrintBacktrace(), PrintCenterLine(), t_cpu_i::printDataPath(), PrintE71(), PrintE82(), PrintE93(), Parser::PrintLine(), PrintLineDataHeader(), PrintRates(), PrintRatio(), PrintShortZero(), PrintSpectrum(), prme(), process_output(), LinSv::prt(), t_physconst::prt_constants(), prt_constants(), prt_header_cols(), prt_line_err(), prt_line_inlist(), prt_LineLabels(), prt_smooth_predictions(), prt_trans_opc_debug(), prt_wl(), PrtAllTau(), PrtColumns(), PrtComment(), PrtElem(), PrtFinal(), PrtHeader(), PrtHydroTrace1(), PrtHydroTrace1a(), isotope::prtIso(), isotope::prtIsoPairs(), PrtLinePres(), PrtLineSum(), prtLineType(), PrtMacros(), PrtMeanIon(), prtmet(), PrtOneMonitor(), prtPunOpacSummary(), t_prt_matrix::prtRates(), PrtTwoPhotonEmissCoef(), PrtZone(), punchFITS_EnergyHeader(), punchFITS_GenericHeader(), punchFITS_ParamData(), punchFITS_ParamHeader(), punchFITS_PrimaryHeader(), punchFITS_SpectraData(), punchFITS_SpectraHeader(), punchFITSimg_ExtensionHeader(), punchFITSimg_PrimaryHeader(), qheat(), qintr(), r1mach(), t_ADfA::rad_rec(), radius_first(), radius_increment(), radius_next(), RauchCompile(), RauchInitialize(), RauchReadMPP(), read_data(), read_Helike_cross_sections(), read_Hummer_Storey(), read_level2_lines(), read_mewe_gbar(), read_SH98_He1_cross_sections(), read_UTA_lines(), t_input::readarray(), ReadBadnellAIData(), Parser::readLaw(), Parser::readList(), ReadTable(), RebinQHeatResults(), rec6j(), t_conv::register_(), renorm_solution(), RT_continuum(), RT_continuum_shield_fcn(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_line_escape(), RT_line_one_fine(), RT_line_one_tau_reset(), RT_line_one_tauinc(), RT_line_pumping(), RT_OTS(), RT_OTS_AddLine(), RT_OTS_ChkSum(), RT_OTS_PrtRate(), RT_recom_effic(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), RTesc_lya_1side(), S2Aul(), SanityCheck(), SanityCheckBegin(), SanityCheckGaunt(), Save1Line(), Save1LineData(), save_average(), save_DT(), save_line(), Save_Line_RT(), save_opacity(), SaveAllSpeciesLabelsLevels(), SaveDo(), saveFITSfile(), SaveGaunts(), SaveGrid(), SaveHeat(), SaveLineData(), SaveLineIntensity(), SaveLineStuff(), SaveResults(), SaveSpecial(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesHeader(), SaveSpeciesLines(), SaveSpeciesOne(), SaveSpeciesOptDep(), SaveSpeciesPseudoCont(), ScaleAllDensities(), ScanProbDistr(), search_limit(), SecIoniz(), Energy::set(), set_weighting(), set_xIntensity(), setIsoNelemFlag(), SetLimits(), setProperties(), t_prt_matrix::setSpecies(), GroupMap::setup(), setXtraRatesO1(), Parser::showLocation(), ShowMe(), size_distr(), solve_system(), diatomics::SolveExcitedElectronicLevels(), solveions(), speciesCheck(), speciesOff(), spectral_to_chemical(), spline_cubic_set(), Split(), StandardEnergyUnit(), StandardFluxUnit(), StarburstCompile(), StarburstInitialize(), states_nelemfill(), stepDensity(), StoutCollRate(), StuffCommand(), StuffComment(), pseudo_cont::sumBand(), band_emission::sumBand(), SumDensities(), t_ADfA::t_ADfA(), t_physconst::t_physconst(), DepthTable::tabval(), TempChange(), TempInterp(), test_cdTemp_molecules(), test_expn(), test_isMolecule(), tfidle(), timestep_next(), TlustyCompile(), TotalInsanity(), totlin(), trim_levels(), uderiv(), ufunct(), UpdatePot(), UpdateUTAs(), validate_magic_number_1arg(), validate_magic_number_3arg(), t_mesh::ValidateEdges(), vary_input(), DataParser::warning(), WernerCompile(), WMBASICCompile(), WriteASCIIData(), WriteASCIIHead(), XERBLA(), xerror_(), y0b01(), Yfunc(), zero(), zoneDensity(), and ZoneStart().

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double fudge ( long int ipnt )

fudge enter fudge factors, or some arbitrary number, with fudge command return value is the fudge factor fudge(-1) queries the routine for the number of fudge parameters that were entered, zero returned if none

Parameters

ipnt	integer saying which of the possible numbers on the fudge command to use - 0 would be the first

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), t_fudgec::fudgea, fudgec, ioQQQ, t_fudgec::lgFudgeUsed, and t_fudgec::nfudge.

Referenced by GrainChargeTemp(), InitEmissivities(), and PresTotCurrent().

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template<class T >

T* get_ptr ( T * v )

inline

get_ptr attribute shim to get raw pointer to contained data with correct type

Referenced by band_cont::accumulate(), t_mesh::anulog10ptr(), t_mesh::anuptr(), qList::Boltzmann(), qList::ConBoltz(), multi_arr< StoutColls, 2 >::data(), dawson10(), funjac(), GammaK(), t_gaunt::gauntff(), GrainCharge(), GrainElecEmis1(), GrainMakeDiffuse(), GrainTemperature(), GrainUpdateRadius2(), H_photo_cs_log10(), HaardtMadauInterpolate(), hunt_bisect(), hunt_bisect_reverse(), InitGridCoStar(), iso_level(), lgReadAtmosphereTail(), mole_solve(), newton_step(), Atom_LevelN::operator()(), outline_base(), t_gaunt::p_gauntff_vec(), t_gaunt::p_gauntff_vec_sub(), punchFITS_GenericData(), RebinAtmosphere(), GroupMap::setup(), solve_system(), and DepthTable::tabval().

template<class T >

T* get_ptr ( valarray< T > & v )

inline

template<class T , class U >

T* get_ptr ( vector< T, U > & v )

inline

template<class T >

const T* get_ptr ( const valarray< T > & v )

inline

template<class T , class U >

const T* get_ptr ( const vector< T, U > & v )

inline

template<class T >

void invalidate_array	(	T *	p,
		size_t	size
	)

inline

Referenced by InitGridCoStar(), multi_arr< StoutColls, 2 >::invalidate(), and flex_arr< double >::invalidate().

void invalidate_array	(	double *	p,
		size_t	size
	)

inline

References set_NaN().

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void invalidate_array	(	sys_float *	p,
		size_t	size
	)

inline

References set_NaN().

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long int ipow	(	long	,
		long
	)

ipow

Returns: m^n

References DEBUG_ENTRY, and is_odd().

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bool is_odd ( int j )

inline

checks whether argument is odd

Referenced by expn(), diatomics::init(), ipow(), powi(), and SaveDo().

bool is_odd ( long j )

inline

long max	(	int	a,
		long	b
	)

inline

Referenced by flex_arr< double >::alloc(), AngerJ(), atmdat_CHIANTI_readin(), bhintegrand_log(), ConvInitSolution(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), t_hydro_tbl::cs(), dawson10(), dBase_solve(), dqage_(), dqagie_(), dqagpe_(), dqagse_(), dqawce_(), dqawfe_(), dqawoe_(), dqawse_(), dqelg_(), dqk15_(), dqk15i_(), dqk15w_(), dqk21_(), dqk31_(), dqk41_(), dqk51_(), dqk61_(), dqng_(), eeBremsSpectrum(), find_arr(), fp_equal(), fp_equal_tol(), t_gaunt::gauntff(), GetProbDistr_LowLimit(), GrainCharge(), GrainMakeDiffuse(), GrnStdDpth(), GrnVryDpth(), Parser::hasCommand(), IncidentContinuumHere(), InitBinAugerData(), phymir_state< X, Y, NP, NSTR >::initial_run(), ion_trim_init(), iso_collide(), iso_cool(), iso_level(), iso_satellite_update(), lgFileReadable(), lines_general(), main(), t_mean::MeanInc(), t_mean::MeanIon(), t_mean::MeanMoleculeTemp(), mie_auxiliary(), mie_cs(), mie_find_slope(), mie_integrate(), mie_read_mix(), mie_repair(), mie_step(), mie_write_opc(), my_Integrand_VF01_E::my_Integrand_VF01_E(), secant_track::next_val(), optimize_func(), optimize_phymir(), avx_ptr< T, lgBC >::p_alloc(), iter_track::p_clear1(), phymir_state< X, Y, NP, NSTR >::p_clear1(), iter_track_basic< T >::p_clear1(), phymir_state< X, Y, NP, NSTR >::p_evaluate_hyperblock(), t_gaunt::p_gauntff_vec_sub(), phymir_state< X, Y, NP, NSTR >::p_setup_next_hyperblock(), pah1_fun(), ParseGrid(), ParseInterp(), ParseStop(), Parser::peekNextCommand(), PrettyTransmission(), qage_(), qagie_(), qagpe_(), qagse_(), qawce_(), qawfe_(), qawoe_(), qawse_(), qelg_(), qheat_init(), qk15_(), qk15i_(), qk15w_(), qk21_(), qk31_(), qk41_(), qk51_(), qk61_(), QN2ind(), qng_(), flex_arr< double >::realloc(), RebinSingleCell(), rec6j(), multi_geom< d, MEM_LAYOUT_VAL >::reserve(), ritoa(), RT_DestProb(), RT_line_all_escape(), RT_line_fine_opacity(), RT_stark(), SanityCheckBegin(), search_limit(), setIsoNelemFlag(), StoutCollArray::setpoints(), t_rfield::setTrimming(), sinpar(), SixJFull(), flex_arr< double >::size(), sjs(), t_dense::t_dense(), t_mean::t_mean(), TempInterp(), TempInterp2(), UpdatePot(), UpdatePot1(), phymir_state< X, Y, NP, NSTR >::xmin(), y0b(), y0b01(), Yfunc(), and ZoneStart().

long max	(	long	a,
		int	b
	)

inline

double max	(	sys_float	a,
		double	b
	)

inline

double max	(	double	a,
		sys_float	b
	)

inline

long min	(	int	a,
		long	b
	)

inline

Referenced by t_gaunt::brems_cool(), t_gaunt::brems_rt(), chi2_func(), conorm(), ConvEdenIoniz(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolEvaluate(), t_hydro_tbl::cs(), CS_l_mixing_PS64_expI(), dawson10(), iter_track::deriv(), dqagpe_(), dqawce_(), dqk15_(), dqk15i_(), dqk15w_(), dqk21_(), dqk31_(), dqk41_(), dqk51_(), dqk61_(), dqng_(), eeBremsSpectrum(), FFmtRead(), find_arr(), fp_equal(), t_gaunt::gauntff(), DataParser::getLineID(), GrainTemperature(), hmrate4(), Parser::init(), load_balance::init(), phymir_state< X, Y, NP, NSTR >::initial_run(), iso_put_recomb_error(), ld01_fun(), lines_general(), mie_auxiliary(), mie_auxiliary2(), mie_cs_size_distr(), mie_integrate(), mie_read_mix(), mie_read_opc(), mie_repair(), mie_write_opc(), my_Integrand_VF01_E::my_Integrand_VF01_E(), iter_track::next_val(), secant_track::next_val(), optimize_func(), optimize_phymir(), iter_track_basic< T >::p_clear1(), phymir_state< X, Y, NP, NSTR >::p_evaluate_hyperblock(), t_gaunt::p_gauntff_vec_sub(), t_hydro_tbl::p_initn(), t_hydro_tbl::p_initnl(), t_hydro_tbl::p_initnn(), t_gaunt::p_setup_brems(), phymir_state< X, Y, NP, NSTR >::p_setup_next_hyperblock(), pah1_fun(), ParseCommands(), PrintRates(), PrtFinal(), qagpe_(), qawce_(), qheat_init(), qk15_(), qk15i_(), qk15w_(), qk21_(), qk31_(), qk41_(), qk51_(), qk61_(), qng_(), read_SH98_He1_cross_sections(), RebinSingleCell(), rec6j(), RT_line_escape(), RT_line_fine_opacity(), SixJFull(), sjs(), Integrator< Integrand, Method >::sum(), VecIntegrator< Integrand, Method >::sum(), TempInterp(), TempInterp2(), UpdatePot(), UpdatePot1(), phymir_state< X, Y, NP, NSTR >::xmax(), y0b(), Yfunc(), iter_track::zero_fit(), and ZoneStart().

long min	(	long	a,
		int	b
	)

inline

double min	(	sys_float	a,
		double	b
	)

inline

double min	(	double	a,
		sys_float	b
	)

inline

void MyAssert	(	const char *	file,
		int	line,
		const char *	comment
	)

MyAssert a version of assert that fails gracefully

Parameters

*file
line

References conv, DEBUG_ENTRY, fnzone, fprintf(), ioQQQ, iteration, t_conv::lgSearch, nzone, ShowMe(), and TorF().

Referenced by cdMain().

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long nint ( double x )

inline

nint rounds to the nearest long int

Referenced by AngerJ(), dqagpe_(), GetOptColDen(), GetOptTemp(), GrainCharge(), GrainsInit(), InitEmissivities(), mie_write_form(), ParseGrid(), ParseSet(), t_ADfA::phfit(), qagpe_(), ReadBadnellAIData(), sinpar(), and size_distr().

long nMatch	(	const char *	chKey,
		const char *	chCard
	)

nMatch determine whether match to a keyword occurs on command line, return value is 0 if no match, and position of match within string if hit

Parameters

*chKey
*chCard

References ASSERT, DEBUG_ENTRY, NULL, and strstr_s().

Referenced by Parser::nMatch1(), ParseGrain(), StandardEnergyUnitNoAbort(), StandardFluxUnit(), and vary_input().

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realnum operator""_r ( unsigned long long l )

inline

realnum operator""_r ( long double l )

inline

NORETURN void OUT_OF_RANGE ( const char * str )

inline

References cpu, t_cpu_i::GenerateBacktrace(), t_cpu::i(), and NULL.

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double plankf ( long int ip )

plankf evaluate Planck function for any cell at current electron temperature

Parameters

ip

References t_mesh::anu(), t_rfield::ContBoltz, DEBUG_ENTRY, POW2, and rfield.

Referenced by SaveDo().

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double pow	(	double	x,
		int	i
	)

inline

References powi().

Referenced by AgeCheck(), Badnell_RR_rate_eval(), ChargTranEval(), t_ADfA::coll_ion(), CollisSuppres(), ColStrGBar(), ConvInitSolution(), CoolEvaluate(), cross_section(), CS_l_mixing_PS64_expI(), da(), dense_fabden(), dense_parametric_wind(), doop(), dqc25s_(), dqk15_(), dqk15i_(), dqk15w_(), dqk21_(), dqk31_(), dqk41_(), dqk51_(), dqk61_(), dqmomo_(), dqng_(), dqwgts_(), DynaFlux(), eeBremsCooling(), eeBremsSpectrum(), esc_PRD_1side(), EvalJenkins(), extin(), ffun1(), FillExtraLymanLine(), ForbiddenAuls(), ga08_oH2_e(), ga08_oH2_H(), ga08_oH2_H_b100(), ga08_oH2_He(), ga08_oH2_oH2(), ga08_oH2_p(), ga08_oH2_pH2(), ga08_pH2_e(), ga08_pH2_H(), ga08_pH2_H_b100(), ga08_pH2_He(), ga08_pH2_oH2(), ga08_pH2_p(), ga08_pH2_pH2(), GbarRateCoeff(), GetPotValues(), GetProbDistr_HighLimit(), GrainDrive(), GrainsInit(), GrainTemperature(), GravitationalPressure(), h21_t_ge_10(), t_ADfA::H_rad_rec(), HCoolRatio(), HCTIon(), HCTRecom(), He2cs123(), he_1trans(), helike_quantum_defect(), highen(), hmrate4(), t_ADfA::hpfit(), hydro_vs_coll_recomb(), hydro_vs_ioniz(), iso_continuum_lower(), iso_state_lifetime(), lines(), lines_hydro(), Magnetic_evaluate(), mie_read_opc(), mie_write_opc(), mole_create_react(), mole_h_reactions(), ofit(), OpacityCreatePowerLaw(), ParseAgn(), ParseDynaWind(), ParseRatio(), t_ADfA::phfit(), pow(), powpq(), pressureZone(), qc25s_(), qk15_(), qk15i_(), qk15w_(), qk21_(), qk31_(), qk41_(), qk51_(), qk61_(), qmomo_(), qng_(), qwgts_(), t_ADfA::rad_rec(), radius_next(), RebinAtmosphere(), RebinQHeatResults(), RebinSingleCell(), t_ADfA::rec_lines(), RT_LineWidth(), RT_stark(), RT_tau_init(), SecIoniz(), shieldFederman(), size_distr(), strkar(), t_physconst::t_physconst(), tfidle(), uderiv(), GroupMap::updateMolecules(), xinvrs(), zoneDensity(), and ZoneStart().

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double pow	(	double	x,
		long	i
	)

inline

References powi().

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sys_float pow	(	sys_float	x,
		int	i
	)

inline

References powi().

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sys_float pow	(	sys_float	x,
		long	i
	)

inline

References powi().

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double pow	(	sys_float	x,
		double	y
	)

inline

References pow().

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double pow	(	double	x,
		sys_float	y
	)

inline

References pow().

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template<class T >

T pow2 ( T a )

inline

Referenced by anomal(), t_gaunt::brems_opac(), Bruggeman(), C2_PR78(), C6cs123(), Ca20cs123(), chi2_func(), cnewton(), ColliderList::ColliderList(), collision_strength_VF01(), CollisSuppres(), conorm(), CoolEvaluate(), CS_l_mixing_PS64(), CS_l_mixing_PS64_expI(), CS_PercivalRichards78(), CSresolver(), DebyeDeriv(), dense_parametric_wind(), Drude(), eeBremsCooling(), eeBremsSpectrum(), exp10(), exp10f(), exp10i(), FastVoigtH(), Fe26cs123(), t_gaunt::gauntff(), gauss_legendre(), get_iso_statw(), GetProbDistr_HighLimit(), GrainMakeDiffuse(), h21_t_ge_10(), h21_t_lt_10(), Hydcs123(), hydro_Fujimoto_deexcit(), hydro_Lebedev_deexcit(), iso_cascade(), iso_collide(), iso_prt_pops(), iso_radiative_recomb_effective(), iso_solve(), iso_state_lifetime(), phymir_state< X, Y, NP, NSTR >::lgConvergedRestart(), linfit(), mie_auxiliary(), mie_cs(), mie_find_slope(), mie_integrate(), mie_read_opc(), mie_read_szd(), mole_effects(), Ne10cs123(), t_ran::normal(), OpacityAddTotal(), Atom_LevelN::operator()(), t_gaunt::p_gauntff_vec_sub(), phymir_state< X, Y, NP, NSTR >::p_phygrm(), t_gaunt::p_setup_brems(), phymir_state< X, Y, NP, NSTR >::p_setup_next_hyperblock(), t_mesh::p_SetupMesh(), t_ran::p_ZigTailNormal(), pah1_fun(), pah2_fun(), pah3_fun(), qheat(), RebinSingleCell(), Recomb_Seaton59(), RT_continuum(), RT_diffuse(), S2Aul(), SanityCheckGaunt(), save_opacity(), sinpar(), size_distr(), Stognienko(), uderiv(), y1psa(), and ZoneStart().

template<class T >

T pow3 ( T a )

inline

template<class T >

T pow4 ( T a )

inline

Referenced by he_1trans(), iso_state_lifetime(), and S2Aul().

double powi	(	double	,
		long	int
	)

powi raise x to integer power

References DEBUG_ENTRY, and is_odd().

Referenced by bessel_jn(), CollisSuppres(), ContCreatePointers(), CS_PercivalRichards78(), DebyeDeriv(), expn(), GrainCharge(), H21_cm_pops(), t_ADfA::H_rad_rec(), highen(), Hion_coll_ioniz_ratecoef(), hrii_log(), hydro_transprob(), hydro_transprob_collapsed_to_collapsed(), HydroRecCool(), InitEmissivities(), iso_rad_rec_cooling_extra(), iso_state_lifetime(), MolDissocCrossSection(), ParseBackgrd(), PlanckIntegral(), pow(), powpq(), PrtComment(), rayleh(), S2Aul(), SaveSpecial(), setXtraRatesFe2(), size_distr(), and t_hydro_tbl::tp().

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double powpq	(	double	x,
		int	p,
		int	q
	)

powpq raise x to rational power p/q

References DEBUG_ENTRY, pow(), and powi().

Referenced by atmdat_dielrec_fe(), ContSetIntensity(), CS_l_mixing_PS64(), CS_l_mixing_PS64_expI(), CS_l_mixing_VOS12(), da(), eeBremsCooling(), eeBremsSpectrum(), elec_esc_length(), ffun1(), GetHelikeCollisionStrength(), GrainScreen(), GrainsInit(), H21cm_electron(), he_1trans(), Hydcs123(), hydro_Fujimoto_deexcit(), hydro_vanRegemorter_deexcit(), hydro_vs_coll_str(), hydro_vs_deexcit(), hydro_vs_ioniz(), ion_recom_calculate(), iso_collide(), iso_continuum_lower(), iso_get_collision_strength(), iso_radrecomb_from_cross_section(), iso_satellite_update(), lgCheckMonitors(), lgValidModel(), mole_partition_function(), my_Integrand_VF01_E::my_Integrand_VF01_E(), OpacityCreateAll(), PrtZone(), qheat_init(), t_ADfA::rec_lines(), Recomb_Seaton59(), RT_stark(), X1Int(), X2Int(), and Yan_H2_CS().

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void PrintE71	(	FILE *	,
		double
	)

print with 1p,e8.1 format onto stream FILE

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by PrtFinal().

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void PrintE82	(	FILE *	,
		double
	)

print with 1p,e8.2 format onto stream FILE all are located in printe82.c

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by AbundancesSet(), IonHydro(), PrtAllTau(), PrtFinal(), and PrtHeader().

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void PrintE93	(	FILE *	,
		double
	)

print with 1p,e9.3 format onto stream FILE

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by HydroLevel(), PrtAllTau(), PrtFinal(), PrtHeader(), PrtHydroTrace1a(), PrtZone(), and save_opacity().

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bool read_whole_line	(	string &	chLine,
		FILE *	ioIN
	)

read_whole_line - safe version of fgets - read an arbitrary length line into C++ string, returns false and an empty string if it cannot read a line

Parameters

string&	chLine - C++ string where the line image will be stored
FILE	*ioIN a previously opened file handle, will read from here

References DEBUG_ENTRY, and NULL.

Referenced by atmdat_LAMDA_readin(), Badnell_rec_init(), cdMain(), ContBandsCreate(), CoStarInitialize(), GetJenkins09(), GetMetalsDeplete(), diatomics::H2_CollidRateRead(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_Read_LTE_cooling_per_H2(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), HyperfineCreate(), t_yield::init_yield(), iso_recomb_setup(), lgReadAtmosphereHead(), bands_file::load(), LoadIsotopes(), mie_next_line(), t_mesh::p_ReadResolution(), ParseAbundances(), ParseInitFile(), RauchInitialize(), read_Helike_cross_sections(), read_level2_lines(), read_mewe_gbar(), diatomics::Read_Mol_Diss_cross_sections(), read_SH98_He1_cross_sections(), read_UTA_lines(), ReadCollisionRateTable(), StarburstInitialize(), validate_magic_number_1arg(), and validate_magic_number_3arg().

sys_float safe_div	(	sys_float	x,
		sys_float	y,
		sys_float	res_0by0
	)

inline

safe_div( x, y ) - do a really safe division x/y returns +/-FLT_MAX if the division would have overflowed (includes div by 0) returns NaN (i.e. crashes) when x or y are NaN, returns res_0by0 when evaluating 0/0

References isnan, and sign3().

Referenced by ContRate(), ConvEdenIoniz(), ConvFail(), ConvTempEdenIoniz(), CoolH2_GA08(), CoolSave(), eden_sum(), EdenError(), get_error_ratio(), GetFracPop(), GrainCharge(), GrainRateDr(), diatomics::H2_Calc_Average_Rates(), diatomics::H2_Cooling(), diatomics::H2_LevelPops(), hydro_vs_coll_str(), hydro_vs_deexcit(), iso_departure_coefficients(), lines(), lines_general(), lines_grains(), lines_molecules(), mie_step(), iter_track::next_val(), ParseGrid(), PrintSpectrum(), PrtFinal(), radius_first(), radius_next(), RT_diffuse(), RT_line_pumping(), safe_div(), SanityCheckBegin(), SaveDo(), SaveHeat(), and wn2ang().

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sys_float safe_div	(	sys_float	x,
		sys_float	y
	)

inline

References safe_div().

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double safe_div	(	double	x,
		double	y,
		double	res_0by0
	)

inline

safe_div( x, y ) - do a really safe division x/y returns +/-DBL_MAX if the division would have overflowed (includes div by 0) returns NaN (i.e. crashes) when x or y are NaN, returns res_0by0 when evaluating 0/0

References isnan, and sign3().

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double safe_div	(	double	x,
		double	y
	)

inline

References safe_div().

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istream& SafeGetline	(	istream &	is,
		string &	t
	)

Referenced by CloudyPrintReference(), and DatabasePrintReference().

sys_float SDIV ( sys_float x )

inline

SDIV safe division - div by SDIV(x) - if abs val of arg >SMALLFLOAT, returns arg, if < SMALLFLOAT, returns SMALLFLOAT - with negative arg return is +SMALLFLOAT so sign changes

References SMALLFLOAT.

Referenced by AbundancesSet(), ChargTranEval(), check_co_ion_converge(), ChemImportance(), collision_strength_VF01(), ContRate(), ConvBase(), ConvInitSolution(), CoolEvaluate(), DynaPunchTimeDep(), fill_array(), frac_H2star_hminus(), funjac(), GammaPrt(), GrainDrive(), diatomics::gs_rate(), H21_cm_pops(), diatomics::H2_Calc_Average_Rates(), diatomics::H2_LevelPops(), diatomics::H2_Prt_column_density(), diatomics::H2_Prt_Zone(), diatomics::H2_PunchDo(), diatomics::H2_Solomon_rate(), diatomics::H2_X_sink_and_source(), HomogeneousSource(), ion_recomb(), ion_trim(), iso_cool(), iso_level(), iter_end_check(), IterEnd(), IterStart(), lgCheckMonitors(), lgCoolHeatCheckConverge(), lgNetEdenSrcSmall(), lgStatesConserved(), lines(), lines_continuum(), lines_grains(), mc_escape(), t_mean::MeanInc(), diatomics::Mol_Photo_Diss_Rates(), mole_effects(), mole_h2_grain_form(), mole_h_rate_diagnostics(), mole_return_cached_species(), ParseAbundances(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtColumns(), PrtComment(), PrtFinal(), PrtLogLin(), PrtOneMonitor(), PrtZone(), radius_first(), radius_increment(), radius_next(), RT_continuum(), RT_line_all_escape(), RT_line_one_tauinc(), SaveDo(), SaveLineData(), SecIoniz(), shieldFederman(), diatomics::SolveExcitedElectronicLevels(), diatomics::SolveSomeGroundElectronicLevels(), and timestep_next().

double SDIV ( double x )

inline

References SMALLFLOAT.

sys_float sexp ( sys_float x )

sexp safe exponential function

References DEBUG_ENTRY, and SEXP_LIMIT.

Referenced by atmdat_dielrec_fe(), atom_level2(), Badnell_DR_rate_eval(), ChargTranEval(), ColStrGBar(), extin(), ffun1(), GetAveVelocity(), t_rfield::getCoarseTransCoef(), GetDopplerWidth(), GrnStdDpth(), H21_cm_pops(), H21cm_electron(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_LevelPops(), H2_vib_dist(), HCTRecom(), highen(), hmrate4(), diatomics::init(), ion_recom_calculate(), IterEnd(), IterRestart(), IterStart(), lines_continuum(), mole_h2_grain_form(), mole_h_reactions(), ParseAgn(), PrtFinal(), RT_continuum(), SaveDo(), and shieldFederman().

double sexp ( double x )

References DEBUG_ENTRY, and SEXP_LIMIT.

void ShowMe ( void )

print comment asking to show output to me

References cdCautions(), cdPrintCommands(), cdWarnings(), t_warnings::chCaunln, t_warnings::chWarnln, conv, t_hextra::cryden, DEBUG_ENTRY, findspecieslocal(), fprintf(), h2, hextra, input, Singleton< t_version >::Inst(), ioQQQ, t_input::lgInitPresent, t_conv::nTeFail, NULL, t_ran::print_seed(), ran, warnings, and molezone::xFracLim.

Referenced by BadRead(), ConserveEnergy(), ContSetIntensity(), ConvEdenIoniz(), ConvFail(), ConvTempEdenIoniz(), CoolEvaluate(), coolpr(), dBase_solve(), escmase(), GetFracPop(), GrainCharge(), diatomics::H2_ReadTransprob(), HeatSum(), ipoint(), iso_level(), iso_radiative_recomb(), iter_end_check(), lgCheckMonitors(), lines(), MyAssert(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtComment(), radius_first(), RT_continuum(), RT_line_escape(), RT_tau_init(), SanityCheckBegin(), SaveDo(), TotalInsanity(), and zoneDensity().

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template<class T >

T sign	(	T	x,
		T	y
	)

inline

FP sign transfer (fortran sign function) - sign of y times abs value of x

Parameters

x
y

Referenced by bessel_jn(), bessel_yn(), ConvEdenIoniz(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolSave(), dqagpe_(), FFmtRead(), FPRead(), IntRead(), lgReactBalance(), mc_escape(), iter_track::next_val(), qagpe_(), qheat_init(), setstp(), xinvrs(), and ZoneStart().

template<class T >

int sign3 ( T x )

inline

sign3 returns -1 for negative arguments, +1 for positive, and 0 for zero (pascal sign function)

Referenced by find_arr(), fp_equal(), iter_track::init_bracket(), and safe_div().

size_t sncatf	(	char *	buf,
		size_t	bufSize,
		const char *	fmt,
			...
	)

References strnlen().

Referenced by diatomics::H2_ParseSave(), parse_save_average(), and ParseSave().

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size_t sncatf	(	ostringstream &	buf,
		const char *	fmt,
			...
	)

References DEBUG_ENTRY.

void spsort	(	realnum	x[],
		long int	n,
		long int	iperm[],
		int	kflag,
		int *	ier
	)

spsort netlib routine to sort array returning sorted indices

Parameters

x[]	input array to be sorted
n	number of values in x
iperm[]	permutation output array
kflag	flag saying what to do - 1 sorts into increasing order, not changing
kflag	the original routine
*ier	error condition, should be 0

References DEBUG_ENTRY.

Referenced by CoolSave(), diatomics::H2_PunchDo(), PrintSpectrum(), PrtLinePres(), SanityCheckBegin(), and SaveHeat().

const char* strchr_s	(	const char *	s,
		int	c
	)

inline

char* strchr_s	(	char *	s,
		int	c
	)

inline

const char* strstr_s	(	const char *	haystack,
		const char *	needle
	)

inline

Referenced by mie_read_opc(), nMatch(), and read_UTA_lines().

char* strstr_s	(	char *	haystack,
		const char *	needle
	)

inline

FILE* sys_fopen	(	const char *	path,
		const char *	mode
	)

inline

References fopen.

Referenced by check_data(), check_mult_path(), and open_data().

void TestCode ( void )

TestCode set flag saying that test code is in place

References DEBUG_ENTRY, and lgTestCodeCalled.

char tolower ( char c )

inline

Referenced by atmdat_CHIANTI_readin(), atmdat_STOUT_readin(), elem_symbol_to_index(), FFmtRead(), iso_init_energies(), tolower(), and uncaps().

unsigned char tolower ( unsigned char c )

inline

References tolower().

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NORETURN void TotalInsanity ( void )

TotalInsanity general error handler for something that cannot happen, exits

References cdEXIT, cpu, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), t_cpu_i::GenerateBacktrace(), t_cpu::i(), ioQQQ, NULL, and ShowMe().

Referenced by AbundancesPrt(), multi_arr< StoutColls, 2 >::alloc(), atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_readin(), avg_shield(), Badnell_rec_init(), t_gaunt::brems_cool(), t_gaunt::brems_opac(), t_gaunt::brems_rt(), cdInit(), cdMain(), CHIANTI_Upsilon(), t_ADfA::coll_ion_wrapper(), CollisSuppres(), conorm(), ContSetIntensity(), ConvInitSolution(), ConvIterCheck(), ConvTempEdenIoniz(), CoolEvaluate(), CoolSave(), cross_section(), t_hydro_tbl::cs(), CSresolver(), database_readin(), dBase_solve(), dBaseUpdateCollCoeffs(), DebyeDeriv(), DynaPunchTimeDep(), DynaSave(), EdenChange(), F21_mx(), fc2(), FFmtRead(), multi_geom< d, MEM_LAYOUT_VAL >::finalize(), FindIndex(), t_LineSave::findline(), flxCell(), ForbiddenAuls(), ForcePass(), get_iso_statw(), GetHelikeCollisionStrength(), GetHlikeCollisionStrength(), getIntenTypeStr(), GrainChargeTemp(), GrainMakeDiffuse(), GravitationalPressure(), GrnStdDpth(), H21_cm_pops(), diatomics::H2_LevelPops(), diatomics::H2_Read_LTE_cooling_per_H2(), HaardtMadauInterpolate(), he_1trans(), helike_quantum_defect(), diatomics::init(), init_seed(), t_yield::init_yield(), InterpolateGridCoStar(), InterpolateModel(), InterpolateRectGrid(), irsl2ind(), iso_assign_quantum_numbers(), iso_create(), iso_cross_section(), iso_get_collision_strength(), iso_get_total_num_levels(), iso_radrecomb_from_cross_section(), iter_end_check(), IterEnd(), lgCheckMonitors(), DataParser::lgEODMarker(), lgReadAtmosphereTail(), lines(), t_mole_global::make_species(), t_mean::MeanIon(), mie_auxiliary(), mie_auxiliary2(), mie_cs_size_distr(), mie_read_mix(), mie_repair(), mie_write_opc(), mole_effects(), mole_generate_isotopologue_reactions(), mole_h_reactions(), my_Integrand_VF01_E::my_Integrand_VF01_E(), Opacity_iso_photo_cs(), Atom_LevelN::operator()(), optimize_do(), phymir_state< X, Y, NP, NSTR >::p_barrier(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), DataParser::p_isComment(), t_gaunt::p_setup_brems(), t_ran::p_u64(), pah2_fun(), pah3_fun(), ParseBlackbody(), ParseCosmology(), ParseCrashDo(), ParseDatabaseH2(), ParseDatabaseISO(), ParseGrain(), ParseTable(), PrintSpectrum(), PrtColumns(), PrtComment(), PrtFinal(), PrtMeanIon(), radius_first(), radius_next(), RauchInitialize(), read_SH98_He1_cross_sections(), read_UTA_lines(), ReadBadnellAIData(), rfield_opac_alloc(), RT_continuum(), RT_continuum_shield_fcn_point(), RT_OTS_ChkSum(), save_average(), save_DT(), SaveDo(), SaveFilesInit(), SaveSpecies(), SaveSpeciesPseudoCont(), sg(), size_distr(), StarburstInitialize(), states_nelemfill(), Integrator< Integrand, Method >::sum(), VecIntegrator< Integrand, Method >::sum(), SumDensities(), t_ran::t_ran(), tbl_fun(), tfidle(), timestep_next(), TlustyInterpolate(), TotalInsanityAsStub(), vary_input(), zoneDensity(), and ZoneStart().

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template<class T >

T TotalInsanityAsStub ( )

References TotalInsanity(), and ZeroNum.

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char toupper ( char c )

inline

Referenced by cap4(), caps(), db_basename_to_spectral(), diatomics::diatomics(), elem_symbol_to_index(), getL(), DataParser::getLineID(), mie_read_word(), and toupper().

unsigned char toupper ( unsigned char c )

inline

References toupper().

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void uncaps ( char * chCard )

uncaps convert input command line (through eol) to all lowercase

Parameters

chCard - line image as string of characters

References DEBUG_ENTRY, and tolower().

Referenced by atmdat_CHIANTI_readin(), atmdat_STOUT_readin(), and db_basename_to_spectral().

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void uncaps ( string & chCard )

References DEBUG_ENTRY, and tolower().

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template<class T >

void vzero ( vector< T > & vec )

inline

Referenced by ContCreateMesh(), dBase_solve(), Spectrum::resize(), rfield_opac_alloc(), rfield_opac_zero(), RT_diffuse(), RT_fine_clear(), RT_OTS_Update(), and RT_tau_reset().

Variable Documentation

const double DEPTH_OFFSET = 1.e-30

this is used to add to depth to prevent div or log of zero

Referenced by ParseSet(), PrtComment(), and t_radius::zero().

const double DSEXP_LIMIT = 680.

this is -ln of smallest number dsexp can handle

Referenced by dsexp().

const int FILENAME_PATH_LENGTH = 200

FILENAME_PATH_LENGTH is the size of the string that holds the path. The longest string that can be held is one less than this, due to the end end of string sentinel in C. Increase this is a larger string is needed to hold the path on your system

const int FILENAME_PATH_LENGTH_2 = FILENAME_PATH_LENGTH*2

twice the above, so that we can add file name to end of full path

Referenced by ParseGrain(), read_Hummer_Storey(), and save_opacity().

double fnzone

this is nzone + conv.nPres2Ioniz/100 in ConvBase

Referenced by cloudy(), ConvBase(), ConvFail(), ConvPresTempEdenIoniz(), CoolEvaluate(), eden_sum(), find_solution(), funjac(), GammaPrt(), GammaPrtShells(), GetFracPop(), GrainCharge(), GrainChargeTemp(), diatomics::H2_Cooling(), diatomics::H2_LevelPops(), diatomics::H2_Reset(), HomogeneousSource(), ion_recomb(), ion_trim(), ion_trim2(), IonHydro(), IonNelem(), iso_level(), mole_h2_grain_form(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_solve(), MyAssert(), Atom_LevelN::operator()(), PresTotCurrent(), PrintRates(), RT_line_all(), RT_line_all_escape(), RT_line_escape(), RT_OTS(), RT_OTS_PrtRate(), and zero().

const int INPUT_LINE_LENGTH = 2000

this is limit to longest line of information that is scanned in, end of line char is actually at this +1, dim of vector is this + 1 all routines that scan in information should use this to dim vars

Referenced by AgeCheck(), prt_smooth_predictions(), and PrtComment().

FILE* ioMAP

Referenced by CloseSaveFiles(), iter_end_check(), ParseMap(), and SaveFilesInit().

FILE* ioPrnErr

we shall write errors to this file, it is set to stderr in cdInit

Referenced by PrtComment(), t_cpu_i::t_cpu_i(), and zero().

FILE* ioQQQ

Referenced by abund_starburst(), AbundancesPrt(), AbundancesSet(), AbundancesTable(), t_PredCont::add(), LinSv::addComponent(), LinSv::addComponentID(), AGN_Hemis(), AtlasCompile(), atmdat_3body(), atmdat_CHIANTI_readin(), atmdat_dielrec_fe(), atmdat_LAMDA_readin(), atmdat_outer_shell(), atmdat_readin(), atmdat_STOUT_readin(), AtmospheresAvail(), Badnell_rec_init(), badprt(), BadRead(), bessel_y0(), bessel_y1(), bessel_yn(), C6cs123(), Ca20cs123(), cdClock(), cdColm(), cdDrive(), cdExecTime(), cdH2_colden(), cdInit(), cdInput(), cdIonFrac(), cdLine_ip(), cdMain(), cdMemory(), cdOutput(), cdPrepareExit(), cdRead(), cdSPEC2(), cdTemp(), ChargTranPun(), ChargTranSumHeat(), check_data(), pseudo_cont::check_index_fatal(), band_emission::check_index_fatal(), check_LAMDA_comment(), check_mult_path(), t_mesh::CheckMesh(), CheckVal(), t_mole_local::chem_heat(), ChemImportance(), chi2_func(), CHIANTI_Upsilon(), chkCaHeps(), chMolBranch(), CloseSaveFiles(), cloudy(), CloudyPrintReference(), cnewton(), t_ADfA::coll_ion_wrapper(), collision_strength_VF01(), CollisSuppres(), Parser::CommandError(), conorm(), ConserveEnergy(), ContBandsCreate(), ContCreateMesh(), ContCreatePointers(), ContNegative(), ContRate(), ContSetIntensity(), ConvBase(), ConvCrossSect2CollStr(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvIoniz(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolEvaluate(), CoolHeatError(), CoolHyperfine(), coolpr(), CoolSave(), CoolSum(), CoStarCompile(), CoStarInitialize(), CoStarListModels(), CS_l_mixing(), database_readin(), DatabasePrintReference(), dBase_solve(), dBaseAbund(), dbg_printf(), dmpary(), doop(), Parser::doSetVar(), DumpCoolStack(), DumpHeatStack(), DumpLine(), DynaEndZone(), DynaIonize(), DynaIterEnd(), DynaIterStart(), DynaNewStep(), DynaPrtZone(), DynaStartZone(), e1(), e1_scaled(), e2(), Parser::echo(), EchoModel(), eden_sum(), EdenError(), ElectronFractions(), ellpk(), Parser::Error(), DataParser::errorAbort(), ErrorMessage(), esc_2side_base(), esc_CRDwing(), escmase(), expn(), extractLevels(), factorial(), fc2_scl(), Fe26cs123(), Parser::FFmtRead(), FFmtRead(), ffun(), ffun1(), FillExtraLymanLine(), FillJ(), find_arr(), find_solution(), t_LineSave::findline(), findspecies_validate(), fndneg(), fndstr(), fudge(), funjac(), GammaPrtShells(), gauss_legendre(), Energy::get(), get_total_abundance_ions(), Parser::getElement(), Parser::getFirstChunk(), Parser::getFirstChunkRaw(), GetFracPop(), GetHelikeCollisionStrength(), GetHlikeCollisionStrength(), band_cont::getInten(), GetJenkins09(), getLevelsGeneric(), Parser::getLineID(), GetLineRec(), GetMetalsDeplete(), Parser::getNumberCheckAlwaysLogLim(), GetOptColDen(), GetOptLineInt(), GetOptTemp(), Parser::getPairs(), t_cpu_i::getPathList(), GetPotValues(), GetProbDistr_HighLimit(), GetProbDistr_LowLimit(), getSpeciesGeneric(), Parser::getSymbol(), getTransition(), diatomics::GetXColden(), GrainCharge(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainDrive(), GrainsInit(), GrainTemperature(), GravitationalPressure(), grid_do(), GridCompile(), GridRetrieveXSPECData(), gridXspec(), GrnStdDpth(), GrnVryDpth(), H21_cm_pops(), diatomics::H2_Colden(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_CollidRateRead(), diatomics::H2_Cooling(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_ParseSave(), diatomics::H2_Prt_Zone(), diatomics::H2_PrtDepartCoef(), diatomics::H2_Punch_line_data(), diatomics::H2_RadPress(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), diatomics::H2_Reset(), diatomics::H2_X_coll_rate_evaluate(), H_Einstein_A_log10(), H_photo_cs_log10(), HaardtMadauCompile(), HCSAR_interp(), HCTIon(), HCTRecom(), He2cs123(), he_1trans(), HeatSum(), helike_energy(), highen(), HomogeneousSource(), t_ADfA::hpfit(), Hydcs123(), hydro_energy(), HydroEinstA(), HydroLevel(), HydroRecCool(), HyperfineCreate(), IncidentContinuumHere(), load_balance::init(), diatomics::init(), t_mole_global::init(), t_yield::init_yield(), InitEmissivities(), InitGrid(), InitIndexArrays(), InitSimPostparse(), InterpolateGridCoStar(), InterpolateModel(), InterpolateModelCoStar(), InterpolateRectGrid(), inv_ufunct(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_trim(), ion_trim2(), ion_wrapper(), IonHelium(), IonHydro(), IonNelem(), ipContEnergy(), ipLineEnergy(), ipoint(), ipShells(), iso_cascade(), iso_collide(), iso_continuum_lower(), iso_cool(), iso_create(), iso_get_collision_strength(), iso_ionize_recombine(), iso_level(), iso_photo(), iso_prt_pops(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_recomb_setup(), iso_renorm(), iso_set_ion_rates(), iso_solve(), iso_update_num_levels(), iter_end_check(), IterEnd(), IterRestart(), IterStart(), KhaireSrianandCompile(), Kurucz79Compile(), lfactorial(), lgCheckMonitors(), lgCompileAtmosphere(), lgConvTemp(), lgCoolNetConverge(), lgElemsConserved(), lgNetEdenSrcSmall(), lgNucleiConserved(), lgReadAtmosphereHead(), lgReadAtmosphereTail(), lgStatesConserved(), lgValidModel(), LimitSh(), lindst(), lines(), lines_continuum(), lines_general(), lines_helium(), lines_hydro(), lines_iron_Ka(), lines_table(), LineStackCreate(), bands_file::load(), LoadIsotopes(), main(), LinSv::makeBlend(), MakeInputLine(), map_do(), maybeNumber(), mc_escape(), t_mean::MeanIon(), mie_auxiliary(), mie_cs(), mie_find_slope(), mie_next_line(), mie_read_double(), mie_read_long(), mie_read_mix(), mie_read_ocn(), mie_read_opc(), mie_read_realnum(), mie_read_rfi(), mie_read_szd(), mie_repair(), mie_step(), mie_write_opc(), MihalasCompile(), mole_check_reverse_reactions(), mole_cmp_num_in_out_reactions(), mole_eval_balance(), mole_generate_isotopologue_reactions(), mole_h2_grain_form(), diatomics::mole_H2_LTE(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_print_species_reactions(), mole_rk_bigchange(), mole_solve(), mole_system_error(), mole_update_rks(), mole_update_species_cache(), my_Integrand_VF01_E::my_Integrand_VF01_E(), MyAssert(), Ne10cs123(), newreact(), newspecies(), newton_step(), Parser::NoNumb(), OpacityAddTotal(), OpacityCreateAll(), OpacityCreateReilMan(), setCollRate::operator()(), Atom_LevelN::operator()(), FunctLAMDA::operator()(), optimize_do(), optimize_func(), optimize_phymir(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), phymir_state< X, Y, NP, NSTR >::p_execute_job_parallel(), Flux::p_InternalFluxUnit(), phymir_state< X, Y, NP, NSTR >::p_process_output(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), EnergyEntry::p_set_ip(), t_mesh::p_SetupMesh(), parse_chemical(), parse_reaction(), parse_save_average(), Parse_Save_Line_RT(), parse_species_label(), ParseAbsMag(), ParseAbundances(), ParseAge(), ParseAgn(), ParseAperture(), ParseBackgrd(), ParseBlackbody(), ParseBremsstrahlung(), ParseChemistry(), ParseCMB(), ParseCommands(), ParseCompile(), ParseConstant(), ParseCoronal(), ParseCosmicRays(), ParseCosmology(), ParseCovering(), ParseCrashDo(), ParseDarkMatter(), ParseDatabase(), ParseDatabaseH2(), ParseDatabaseISO(), ParseDielectronic(), ParseDiffuse(), ParseDLaw(), ParseDont(), ParseDynaTime(), ParseDynaWind(), ParseElement(), ParseEnergy(), ParseExtinguish(), ParseF_nu(), ParseFail(), ParseFill(), ParseFluc(), ParseForceTemperature(), ParseGlobule(), ParseGrain(), ParseGravity(), ParseGrid(), ParseHDEN(), ParseHeLike(), ParseHelp(), ParseHExtra(), ParseHydrogen(), ParseIlluminate(), ParseInit(), ParseIntensity(), ParseInterp(), ParseIonPar(), ParseLaser(), ParseLineList(), ParseLuminosity(), ParseMagnet(), ParseMap(), ParseMetal(), ParseMonitorResults(), ParseNorm(), ParseNumber(), ParseOptimize(), ParsePGrains(), ParsePhi(), ParsePowerlawContinuum(), ParsePrint(), ParseQH(), ParseRadius(), ParseRangeOption(), ParseRatio(), ParseSave(), ParseSet(), ParseSpecies(), ParseSphere(), ParseStop(), ParseTable(), ParseTLaw(), ParseTolerance(), ParseTrace(), ParseTurbulence(), PlanckIntegral(), PntForLine(), PressureChange(), PresTotCurrent(), bad_assert::print(), print_delimiter(), print_emline_fine(), iter_track::print_history(), iter_track::print_status(), t_cpu_i::PrintBacktrace(), t_cpu_i::printDataPath(), PrintRates(), PrintRatio(), PrintSpectrum(), prme(), process_output(), prt_constants(), prt_header_cols(), prt_smooth_predictions(), prt_trans_opc_debug(), PrtAllTau(), PrtComment(), PrtElem(), PrtFinal(), PrtHeader(), PrtHydroTrace1(), PrtHydroTrace1a(), PrtLineSum(), PrtMacros(), PrtMeanIon(), prtmet(), prtPunOpacSummary(), t_prt_matrix::prtRates(), PrtTwoPhotonEmissCoef(), PrtZone(), punchFITS_SpectraData(), qheat(), qheat_init(), qintr(), t_ADfA::rad_rec(), radius_first(), radius_increment(), radius_next(), RauchCompile(), RauchInitialize(), RauchReadMPP(), read_Helike_cross_sections(), read_Hummer_Storey(), read_level2_lines(), read_mewe_gbar(), read_SH98_He1_cross_sections(), read_UTA_lines(), t_input::readarray(), ReadBadnellAIData(), Parser::readLaw(), Parser::readList(), ReadTable(), RebinQHeatResults(), rec6j(), Recomb_Seaton59(), t_conv::register_(), renorm_solution(), RT_continuum(), RT_continuum_shield_fcn(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_line_escape(), RT_line_one_fine(), RT_line_one_tau_reset(), RT_line_one_tauinc(), RT_line_pumping(), RT_OTS(), RT_OTS_AddLine(), RT_OTS_ChkSum(), RT_OTS_PrtRate(), RT_recom_effic(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), RTesc_lya_1side(), S2Aul(), SanityCheck(), SanityCheckBegin(), SanityCheckGaunt(), save_average(), save_line(), Save_Line_RT(), save_opacity(), SaveDo(), SaveHeat(), SaveLineData(), SaveLineStuff(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesOptDep(), SaveSpeciesPseudoCont(), ScaleAllDensities(), ScanProbDistr(), search_limit(), SecIoniz(), Energy::set(), set_weighting(), set_xIntensity(), setIsoNelemFlag(), SetLimits(), setProperties(), t_prt_matrix::setSpecies(), GroupMap::setup(), setXtraRatesO1(), ShowMe(), size_distr(), solve_system(), diatomics::SolveExcitedElectronicLevels(), solveions(), speciesCheck(), speciesOff(), spectral_to_chemical(), spline_cubic_set(), Split(), StandardEnergyUnit(), StandardFluxUnit(), StarburstCompile(), StarburstInitialize(), states_nelemfill(), stepDensity(), StoutCollRate(), StuffCommand(), StuffComment(), pseudo_cont::sumBand(), band_emission::sumBand(), SumDensities(), t_ADfA::t_ADfA(), t_cpu_i::t_cpu_i(), DepthTable::tabval(), TempChange(), TempInterp(), test_cdTemp_molecules(), test_expn(), test_isMolecule(), tfidle(), timestep_next(), TlustyCompile(), TotalInsanity(), totlin(), trim_levels(), uderiv(), ufunct(), UpdatePot(), UpdateUTAs(), validate_magic_number_1arg(), validate_magic_number_3arg(), t_mesh::ValidateEdges(), vary_input(), DataParser::warning(), WernerCompile(), WMBASICCompile(), XERBLA(), xerror_(), y0b01(), Yfunc(), zero(), zoneDensity(), and ZoneStart().

FILE* ioStdin

Referenced by cdInput(), cdMain(), and t_cpu_i::t_cpu_i().

const int ipALUMINIUM = 12

Referenced by ChargTranEval(), PrtZone(), and SaveDo().

const int ipARGON = 17

Referenced by ChargTranEval(), ElectronFractions(), ForbiddenAuls(), InitDefaultsPreparse(), and t_ADfA::set_vshell_index().

const int ipBERYLLIUM = 3

Referenced by PrtZone().

const int ipBORON = 4

Referenced by PrtZone().

const int ipCALCIUM = 19

Referenced by chkCaHeps(), cross_section(), ion_photo(), lines(), read_Helike_cross_sections(), and t_ADfA::set_vshell_index().

const int ipCHLORINE = 16

Referenced by ChargTranEval().

const int ipCHROMIUM = 23

const int ipCOBALT = 26

const int ipCOPPER = 28

const int ipCRD = -1

Referenced by database_prep(), lines_setup(), ParseDatabaseISO(), RT_continuum_shield_fcn_point(), RT_line_escape(), and t_isoCTRL::zero().

const int ipCRDW = 2

Referenced by database_prep(), diatomics::init(), iso_satellite(), ParseDatabaseISO(), RT_continuum_shield_fcn_point(), RT_line_escape(), and t_isoCTRL::zero().

const int ipFLUORINE = 8

const int ipHELIUM = 1

Referenced by AbundancesSet(), AGN_Hemis(), Badnell_rec_init(), t_gaunt::brems_sum_ions(), cdColm(), ChargTranEval(), ChargTranPun(), ChargTranSumHeat(), ColliderList::ColliderList(), ContCreatePointers(), ContSetIntensity(), ConvBase(), CoolH2_GA08(), cross_section(), ElectronFractions(), FillExtraLymanLine(), ForbiddenAuls(), GetHelikeCollisionStrength(), GetStandardHeLines(), GrainDrift(), GrainRateDr(), diatomics::H2_X_coll_rate_evaluate(), he_1trans(), He_cross_section(), HeatSum(), HeCollidSetup(), HeCSInterp(), HeCSTableInterp(), helike_quantum_defect(), hydro_vanRegemorter_deexcit(), ColliderList::init(), t_yield::init_yield(), InitDefaultsPreparse(), ion_photo(), ion_recom_calculate(), ion_trim(), ion_trim2(), ion_wrapper(), IonHelium(), iso_assign_quantum_numbers(), iso_cascade(), iso_collapsed_update(), iso_continuum_lower(), iso_init(), iso_level(), iso_put_recomb_error(), iso_radiative_recomb(), iso_set_ion_rates(), iso_zero(), lgCheckMonitors(), LIKE_RREC_MAXN(), lines(), lines_general(), lines_helium(), lines_hydro(), lines_molecules(), map_do(), mole_create_react(), mole_h_rate_diagnostics(), mole_h_reactions(), OpacityAddTotal(), OpacityCreateAll(), ParseElement(), ParseMonitorResults(), ParseSave(), PrintRates(), PrtAllTau(), PrtComment(), PrtFinal(), PrtHeader(), PrtMeanIon(), PrtZone(), radius_increment(), radius_next(), RT_diffuse(), RT_OTS(), RT_OTS_PrtRate(), RT_tau_init(), SanityCheckBegin(), save_opacity(), SaveDo(), SecIoniz(), t_mesh::ValidateEdges(), and t_secondaries::zero().

const int ipHYDROGEN = 0

these are indices for some elements, on the C scale

Referenced by AbundancesPrt(), AbundancesSet(), AbundChange(), AGN_Hemis(), t_secondaries::alloc(), Badnell_rec_init(), t_gaunt::brems_sum_ions(), diatomics::CalcPhotoionizationRate(), cdColm(), cdIonFrac(), cdTemp(), ChargTranEval(), ChargTranPun(), ChargTranSumHeat(), chkCaHeps(), ColliderList::ColliderList(), conorm(), ContCreatePointers(), ContRate(), ContSetIntensity(), ConvBase(), ConvFail(), ConvInitSolution(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolDima(), CoolEvaluate(), CoolH2_GA08(), CoolHyperfine(), dBase_solve(), DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaPunchTimeDep(), DynaSave(), DynaSaveLast(), DynaStartZone(), eden_sum(), EdenChange(), ElectronFractions(), find_solution(), Parser::getElement(), GetHlikeCollisionStrength(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainDrive(), GrainMakeDiffuse(), GrainRateDr(), GrainsInit(), GrainTemperature(), GrainUpdateRadius1(), GrnStdDpth(), GrnVryDpth(), H21_cm_pops(), diatomics::H2_PunchDo(), diatomics::H2_PunchLineStuff(), diatomics::H2_X_coll_rate_evaluate(), he_1trans(), HeatSum(), highen(), HlikeCSInterp(), HomogeneousSource(), Hydcs123(), hydro_vanRegemorter_deexcit(), ColliderList::init(), diatomics::init(), init_struc(), t_yield::init_yield(), InitBinAugerData(), InitDefaultsPreparse(), InitSimPostparse(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_recombAGN(), ion_trim(), ion_trim2(), ion_trim_from_set(), ion_trim_init(), ion_wrapper(), IonHydro(), iso_assign_quantum_numbers(), iso_charge_transfer_update(), iso_collapsed_update(), iso_continuum_lower(), iso_cool(), iso_create(), iso_init(), iso_level(), iso_multiplet_opacities(), iso_photo(), iso_setRedisFun(), iso_suprathermal(), iso_update_rates(), iso_zero(), iter_end_check(), IterRestart(), IterStart(), lgCheckMonitors(), lgElemsConserved(), lines(), lines_continuum(), lines_general(), lines_helium(), lines_hydro(), lines_molecules(), logPressureState(), t_mole_global::make_species(), MakeHCTData(), map_do(), t_mean::MeanInc(), mie_read_form(), mole_effects(), diatomics::mole_H2_form(), mole_h2_grain_form(), mole_h_fixup(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_solve(), newspecies(), OpacityAddTotal(), OpacityCreateAll(), pah1_fun(), ParseAbundances(), ParseCommands(), ParseDatabaseISO(), ParseDLaw(), ParseElement(), ParseFluc(), ParseGlobule(), ParseHDEN(), ParsePrint(), PressureChange(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtAllTau(), PrtColumns(), PrtComment(), PrtFinal(), PrtHeader(), PrtHydroTrace1(), PrtMeanIon(), PrtZone(), radius_first(), radius_increment(), radius_next(), read_ionization_potentials(), RT_continuum(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_pumping(), RT_OTS(), RT_tau_inc(), RT_tau_init(), SanityCheckBegin(), save_opacity(), SaveDo(), SaveLineData(), SaveSpecial(), ScaleAllDensities(), ScaleIonDensities(), scalingDensity(), SecIoniz(), t_dense::SetGasPhaseDensity(), setIsoNelemFlag(), setXtraRatesCa2(), setXtraRatesFe2(), setXtraRatesO1(), states_nelemfill(), SumDensities(), t_atmdat::t_atmdat(), t_ionbal::t_ionbal(), tfidle(), total_molecule_elems(), t_mesh::ValidateEdges(), t_secondaries::zero(), t_dense::zero(), and zoneDensity().

const int ipIRON = 25

Referenced by Badnell_DR_rate_eval(), Badnell_RR_rate_eval(), ChargTranEval(), database_prep(), dBase_solve(), GetHelikeCollisionStrength(), InitDefaultsPreparse(), ion_photo(), ion_recom_calculate(), iso_init(), lines(), lines_iron_Ka(), read_UTA_lines(), SaveDo(), t_ADfA::set_vshell_index(), setXtraRatesFe2(), and t_rfield::zero().

const int ipKRYPTON = 35

Referenced by ElectronFractions().

const int ipLITHIUM = 2

Referenced by AbundancesSet(), AbundChange(), t_gaunt::brems_sum_ions(), ChargTranEval(), ChargTranSumHeat(), ContSetIntensity(), CoolEvaluate(), cross_section(), eden_sum(), GrainsInit(), ion_recombAGN(), PrtZone(), read_Helike_cross_sections(), and save_opacity().

const int ipLY_A = -2

Referenced by iso_setRedisFun(), ParseDatabaseISO(), RT_continuum_shield_fcn_point(), RT_line_escape(), RT_line_one_escape(), RT_line_one_fine(), and RT_line_pumping().

const int ipMAGNESIUM = 11

Referenced by ChargTranEval(), InitDefaultsPreparse(), ion_photo(), iso_init(), OpacityAddTotal(), and SaveDo().

const int ipMANGANESE = 24

Referenced by ChargTranEval(), and t_ADfA::set_vshell_index().

const int ipNEON = 9

Referenced by ChargTranEval(), ElectronFractions(), ForbiddenAuls(), InitDefaultsPreparse(), and iso_init().

const int ipNICKEL = 27

Referenced by ChargTranEval().

const int ipNITROGEN = 6

Referenced by ChargTranEval(), InitDefaultsPreparse(), ion_photo(), iso_init(), lines(), OpacityAddTotal(), and PrtZone().

const int ipOXYGEN = 7

const int ipPHOSPHORUS = 14

Referenced by ChargTranEval().

const int ipPOTASSIUM = 18

Referenced by ChargTranEval(), and OpacityCreateAll().

const int ipPRD = 1

with the above, the total radiative rec per ion is iso.RadRecomb[ipISO][nelem][n][ipRecRad]* iso.RadRecomb[ipISO][nelem][n][ipRecNetEsc]*dense.eden;

Referenced by database_prep(), lines_setup(), ParseDatabaseISO(), read_UTA_lines(), ReadBadnellAIData(), RT_continuum_shield_fcn_point(), RT_line_escape(), and t_isoCTRL::zero().

const int ipRecEsc = 2

Referenced by iso_radiative_recomb(), lines_continuum(), freeBound::Reset(), RT_iso_integrate_RRC(), RT_OTS(), and SaveDo().

const int ipRecNetEsc = 1

Referenced by iso_ionize_recombine(), iso_rad_rec_cooling_approx(), iso_rad_rec_cooling_discrete(), iso_rad_rec_cooling_extra(), iso_radiative_recomb(), IterStart(), freeBound::Reset(), and SaveDo().

const int ipRecRad = 0

Referenced by HydroRecCool(), iso_cool(), iso_ionize_recombine(), iso_rad_rec_cooling_approx(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_solve(), IterStart(), lines_continuum(), freeBound::Reset(), RT_OTS(), and SaveDo().

const int ipSCANDIUM = 20

Referenced by t_ADfA::set_vshell_index().

const int ipSILICON = 13

Referenced by ChargTranEval(), InitDefaultsPreparse(), iso_init(), and SaveDo().

const int ipSODIUM = 10

Referenced by ChargTranEval(), and SaveDo().

const int ipSULPHUR = 15

Referenced by ChargTranEval(), InitDefaultsPreparse(), iso_init(), and SaveDo().

const int ipTITANIUM = 21

Referenced by ChargTranEval(), and t_ADfA::set_vshell_index().

const int ipVANADIUM = 22

const int ipZINC = 29

long int iteration

the iteration counter, set and incremented in routine cloudy, ==1 during first iteration, 2 during second, etc

Referenced by diatomics::CalcPhotoionizationRate(), cdMain(), cloudy(), ConserveEnergy(), ConvBase(), ConvFail(), ConvInitSolution(), ConvIterCheck(), ConvPresTempEdenIoniz(), CoolEvaluate(), DynaIonize(), DynaIterEnd(), DynaIterStart(), DynaStartZone(), emergent_line(), esc_2side_base(), esc_CRDcore(), funjac(), GrainCharge(), diatomics::H2_Level_low_matrix(), diatomics::H2_Reset(), HomogeneousSource(), iso_level(), iter_end_check(), IterEnd(), IterRestart(), IterStart(), lgCheckMonitors(), lgTauGood(), lines(), mole_eval_dynamic_balance(), mole_h_reactions(), MyAssert(), Atom_LevelN::operator()(), PresTotCurrent(), PrintSpectrum(), PrtComment(), PrtFinal(), PrtHydroTrace1(), radius_first(), radius_increment(), radius_next(), renorm_solution(), RT_continuum(), RT_line_one_tau_reset(), RT_LineWidth(), RT_OTS_AddLine(), RT_recom_effic(), save_DT(), SaveDo(), setXtraRatesFe2(), t_iterations::zero(), and ZoneStart().

bool lgPrnErr

this is flag saying whether to print errors to standard error output

Referenced by ParsePrint(), PrtComment(), t_cpu_i::t_cpu_i(), and zero().

bool lgTestCodeCalled

flag lgTestIt turned on if routine TestCode ever called, only generates comment that test code is in place

Referenced by PrtComment(), TestCode(), and zero().

bool lgTestCodeEnabled

flag lgTestOn set true with SET TEST command for some test code to be run somewhere

Referenced by ParseSet(), and zero().

const int LIMELM = 30

This is the number of elements included in the code, is used to set lengths of many vectors

Referenced by abund_starburst(), AbundancesPrt(), AbundancesSet(), AbundChange(), t_secondaries::alloc(), t_ionbal::alloc(), t_mole_local::alloc(), atmdat_3body(), atmdat_readin(), Badnell_DR_rate_eval(), Badnell_rec_init(), Badnell_RR_rate_eval(), t_gaunt::brems_cool(), t_gaunt::brems_opac(), t_gaunt::brems_rt(), t_gaunt::brems_sum_ions(), cdColm(), cdIonFrac(), cdTemp(), ChargTranEval(), ChargTranPun(), ChargTranSumHeat(), chIonLbl(), t_ADfA::coll_ion_wrapper(), ContCreatePointers(), ContSetIntensity(), ConvBase(), ConvInitSolution(), ConvIterCheck(), CoolDima(), CoolEvaluate(), CoolHyperfine(), CoolSave(), CoolZero(), t_hydro_tbl::cs(), database_readin(), dBase_solve(), dBaseAbund(), DumpHeatStack(), DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaSaveLast(), DynaStartZone(), eden_sum(), ElectronFractions(), elem_symbol_to_index(), EvalJenkins(), fill_array(), t_gaunt::gauntff(), get_total_abundance_ions(), Parser::GetElem(), Parser::getElement(), GetJenkins09(), GetMetalsDeplete(), GrainChargeTemp(), GrainChrgTransferRates(), GrainCollHeating(), GrainDrive(), GrainElecEmis1(), GrainElecRecomb1(), GrainScreen(), GrainsInit(), GrainUpdateRadius1(), H_Einstein_A(), HCTIon(), HCTRecom(), HeatSum(), HeatZero(), HeCSInterp(), helike_quantum_defect(), HelikeTransProbSetup(), highen(), Hydcs123(), HydroLevel(), HyperfineCreate(), init_struc(), t_yield::init_yield(), InitBinAugerData(), InitCoreloadPostparse(), InitDefaultsPreparse(), InitSimPostparse(), ion_collis(), ion_CX(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_recombAGN(), ion_solver(), ion_trim(), ion_trim2(), ion_trim_from_set(), ion_trim_init(), ion_wrapper(), ipShells(), iso_allocate(), iso_assign_quantum_numbers(), iso_charge_transfer_update(), iso_collide(), iso_continuum_lower(), iso_cool(), iso_create(), iso_init(), iso_init_energies(), iso_ionize_recombine(), iso_level(), iso_multiplet_opacities(), iso_photo(), iso_put_error(), iso_rad_rec_cooling_discrete(), iso_radiative_recomb(), iso_recomb_alloc(), iso_recomb_setup(), iso_satellite(), iso_suprathermal(), iso_update_rates(), iso_zero(), IterRestart(), IterStart(), lgNetEdenSrcSmall(), lines(), lines_continuum(), lines_general(), lines_helium(), lines_hydro(), lines_setup(), t_mole_global::make_species(), MakeHCTData(), map_do(), t_mean::MeanInc(), mie_read_form(), mie_read_mix(), mie_read_opc(), mie_read_rfi(), mie_write_form(), mie_write_opc(), mole_eval_dynamic_balance(), mole_eval_sources(), mole_make_groups(), my_Integrand_VF01_E::my_Integrand_VF01_E(), NewChargeData(), newisotope(), OpacityAdd1Element(), OpacityAddTotal(), OpacityCreate1Element(), OpacityCreateAll(), GrainVar::p_clear0(), GrainVar::p_clear1(), t_gaunt::p_gauntff_vec_sub(), t_hydro_tbl::p_initnn(), t_gaunt::p_read_table(), t_gaunt::p_setup_brems(), ParseAbundances(), ParseCompile(), ParseDatabaseISO(), ParseElement(), ParseMetal(), ParsePrint(), ParseSave(), ParseSet(), parsespect(), PresTotCurrent(), prt_smooth_predictions(), PrtColumns(), PrtComment(), PrtLinePres(), PrtMeanIon(), prtmet(), PrtZone(), radius_increment(), radius_next(), read_ionization_potentials(), read_UTA_lines(), ReadAugerData(), renorm_solution(), RT_diffuse(), RT_iso_integrate_RRC(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_OTS(), RT_OTS_Update(), RT_stark(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SanityCheckBegin(), save_opacity(), SaveDo(), SaveGaunts(), SaveHeat(), SaveLineData(), SaveLineStuff(), SaveResults(), ScaleAllDensities(), SecIoniz(), setIsoNelemFlag(), SetIsotopeFractions(), spectral_to_chemical(), SumDensities(), t_abund::SumDepletedAtoms(), t_ADfA::t_ADfA(), t_atmdat::t_atmdat(), t_dense::t_dense(), t_ionbal::t_ionbal(), t_mean::t_mean(), t_yield::t_yield(), tfidle(), total_molecule_elems(), t_hydro_tbl::tp(), UpdatePot1(), UpdateRecomZ0(), UpdateUTAs(), t_hydro_tbl::wn(), t_secondaries::zero(), t_thermal::zero(), t_ionbal::zero(), t_dense::zero(), t_abund::zero(), t_atmdat::zero(), t_mole_global::zero(), and t_isoCTRL::zero().

const double MAX_DENSITY = 1.e24

this is the maximum particle density allowed in cm^-3

Referenced by AbundancesSet(), find_solution(), get_total_abundance_ions(), iso_collide(), iso_continuum_lower(), ParseHDEN(), renorm_solution(), and store_new_densities().

const int NCHLAB = 20

used for a few label vectors in lines.h and stopcalc.h

Referenced by cdColm(), LinSv::chALabSet(), TransitionProxy::chLabel(), ContCreatePointers(), t_LineSave::findline(), LinSv::label(), lgCheckMonitors(), lines_general(), LinSv::makeBlend(), ParseMonitorResults(), ParseNorm(), ParseSet(), ParseStop(), prt_line_inlist(), PrtColumns(), PrtOneMonitor(), PutLine(), SaveDo(), SetPrintLineCol(), and spectral_to_chemical().

const int NHYDRO_MAX_LEVEL = 401

following is real limit to how many levels can be computed for model hydrogen atom - this has the one extra included, so at most iso.numLevels_max[ipH_LIKE] can be NHYDRO_MAX_LEVEL-1 and vectors should be dim NHYDRO_MAX_LEVEL

Referenced by t_ADfA::H_rad_rec(), t_ADfA::hpfit(), iso_radiative_recomb(), iso_recomb_setup(), Opacity_iso_photo_cs(), ParseDatabaseISO(), and t_ADfA::t_ADfA().

const int NISO = 2

the number of iso sequences now in the code

Referenced by t_ionbal::alloc(), Badnell_rec_init(), clean_up(), ContCreatePointers(), ContSetIntensity(), ConvBase(), ConvIterCheck(), CoolDima(), CoolEvaluate(), CoolHyperfine(), CoolSum(), DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaSaveLast(), DynaStartZone(), fill_array(), FindNeg(), FndLineHt(), HeatSum(), init_struc(), InitCoreloadPostparse(), InitDefaultsPreparse(), InitSimPostparse(), ion_collis(), ion_CX(), ion_photo(), ion_recomb(), ion_solver(), ion_trim(), ion_trim2(), ion_widen(), ipShells(), iso_allocate(), iso_assign_quantum_numbers(), iso_collapsed_update(), iso_collide(), iso_collisional_ionization(), iso_cool(), iso_create(), iso_init(), iso_init_energies(), iso_ionize_recombine(), iso_level(), iso_multiplet_opacities(), iso_photo(), iso_prt_pops(), iso_put_error(), iso_radiative_recomb(), iso_recomb_alloc(), iso_recomb_setup(), iso_satellite(), iso_satellite_update(), iso_suprathermal(), iso_update_rates(), iso_zero(), IterRestart(), IterStart(), lgTrivialSolution(), lines(), lines_continuum(), OpacityAdd1Element(), OpacityAddTotal(), ParseElement(), PresTotCurrent(), PrintRates(), PrtComment(), PrtLinePres(), prtmet(), PrtZone(), radius_increment(), renorm_solution(), RT_diffuse(), RT_iso_integrate_RRC(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_OTS(), RT_OTS_Update(), RT_stark(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SanityCheckBegin(), SaveLineData(), SaveLineStuff(), ScaleIonDensities(), SecIoniz(), setIsoNelemFlag(), spectral_to_chemical(), t_dynamics::zero(), and t_isoCTRL::zero().

long int nzone

nzone is zone counter, incremented in routine cloudy is zero during search phase, 1 for first zone at illuminated face

Referenced by AbundChange(), AgeCheck(), AGN_Hemis(), t_timesc::calc_therm_timesc(), diatomics::CalcPhotoionizationRate(), cdDepth_depth(), cdMain(), cdnZone(), cdPressure_depth(), t_mole_local::chem_heat(), cloudy(), ConserveEnergy(), ContNegative(), ConvBase(), ConvEdenIoniz(), ConvFail(), ConvIterCheck(), ConvPresTempEdenIoniz(), CoolEvaluate(), CoolHeatError(), dBase_solve(), dmpary(), DynaIonize(), DynaNewStep(), DynaPrtZone(), DynaSaveLast(), DynaStartZone(), EdenChange(), escmase(), fndstr(), GetProbDistr_HighLimit(), GetProbDistr_LowLimit(), gett2(), gett2o3(), GrainChargeTemp(), GrainDrive(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_RT_tau_inc(), HeatSum(), HomogeneousSource(), ion_trim(), ion_trim2(), IonHelium(), iso_cool(), iso_level(), iso_photo(), iso_set_ion_rates(), iso_update_rates(), iter_end_check(), IterEnd(), lgCheckMonitors(), lgElemsConserved(), lgNetEdenSrcSmall(), lgStatesConserved(), lindst(), lines_continuum(), lines_hydro(), map_do(), mole_effects(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_rk_bigchange(), mole_solve(), MyAssert(), NewChargeData(), OpacityAddTotal(), Atom_LevelN::operator()(), PressureChange(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtComment(), PrtFinal(), PrtZone(), qheat(), radius_first(), radius_increment(), radius_next(), renorm_solution(), RT_continuum(), RT_continuum_shield_fcn(), RT_DestProb(), RT_diffuse(), RT_iso_integrate_RRC(), RT_line_all_escape(), RT_line_one_fine(), RT_line_one_tauinc(), RT_OTS(), RT_stark(), RT_tau_inc(), save_line(), SaveDo(), SaveLineIntensity(), SpeciesPseudoContAccum(), stepDensity(), zero(), zoneDensity(), and ZoneStart().

const double SEXP_LIMIT = 84.

this is -ln of smallest number sexp can handle

Referenced by mole_get_equilibrium_condition(), RT_diffuse(), and sexp().

const double ZeroNum

this is the number zero, used to trick clever compilers when dividing by it to crash program there is a routine called zero - this name cannot overlap definition is in cddefines.cpp

Referenced by ParseCrashDo(), RandomCrash(), and TotalInsanityAsStub().

const void* ZeroPtr

this is used to trick compilers into dereferencing a null pointer in order to crash the program

Referenced by ParseCrashDo(), and RandomCrash().

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