dynamics.cpp File Reference

#include "cddefines.h"
#include "cddrive.h"
#include "struc.h"
#include "colden.h"
#include "radius.h"
#include "stopcalc.h"
#include "hextra.h"
#include "iterations.h"
#include "conv.h"
#include "timesc.h"
#include "dense.h"
#include "mole.h"
#include "thermal.h"
#include "pressure.h"
#include "phycon.h"
#include "wind.h"
#include "iso.h"
#include "dynamics.h"
#include "cosmology.h"
#include "parser.h"
#include "rfield.h"
#include "container_classes.h"
#include "save.h"
#include "trace.h"

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Macros
#define	MERGE   0

Functions
STATIC void	DynaNewStep (void)
STATIC void	DynaSaveLast (void)
STATIC bool	lgNeedTimestep ()
STATIC void	InitDynaTimestep ()
STATIC void	save_DT (double dtime, double this_fact, string &reason)
STATIC double	timestep_next (void)
void	DynaIonize (void)
void	DynaStartZone (void)
void	DynaEndZone (void)
void	DynaIterEnd (void)
realnum	DynaFlux (double depth)
void	DynaCreateArrays ()
STATIC void	advection_set_default (bool lgWind)
void	ParseDynaTime (Parser &p)
void	ParseDynaWind (Parser &p)
void	DynaPrtZone (void)
void	DynaPunchTimeDep (FILE *ipPnunit, const char *chJob)
void	DynaSave (FILE *ipPnunit, char chJob)
void	DynaIterStart (void)

Variables
static const bool	lgPrintDynamics = false
t_dynamics	dynamics
static int	ipUpstream =-1
static int	iphUpstream =-1
static int	ipyUpstream =-1
static multi_arr< double, 2 >	UpstreamIon
static multi_arr< double, 3 >	UpstreamStatesElem
static vector< double >	UpstreamElem
static vector< double >	Upstream_molecules
static vector< double >	time_elapsed_time
static vector< double >	time_flux_ratio
static vector< double >	time_dt
static vector< double >	time_dt_scale_factor
static bool	lgtime_dt_specified
static vector< int >	lgtime_Recom
static const int	NTIME = 200
static long int	nTime_flux =0
static double	Dyn_dr
static double	AdvecSpecificEnthalpy
static vector< double >	Old_depth
static vector< realnum >	Old_histr
static vector< realnum >	Old_xLyman_depth
static vector< realnum >	Old_hiistr
static vector< realnum >	Old_pressure
static vector< realnum >	Old_density
static vector< realnum >	Old_DenMass
static vector< realnum >	EnthalpyDensity
static vector< realnum >	Old_ednstr
static vector< realnum >	Old_EnthalpyDensity
static multi_arr< realnum, 2 >	Old_molecules
static multi_arr< realnum, 3 >	Old_xIonDense
static multi_arr< realnum, 2 >	Old_gas_phase
static multi_arr< realnum, 4 >	Old_StatesElem
static long int	nOld_zone

Macro Definition Documentation

#define MERGE   0

Referenced by t_dynamics::Cool(), and t_dynamics::Heat().

Function Documentation

STATIC void advection_set_default

(

bool

lgWind

)

References conv, DEBUG_ENTRY, t_conv::EdenErrorAllowed, t_conv::HeatCoolRelErrorAllowed, t_dynamics::lgAdvection, t_thermal::lgPredNextTe, t_pressure::lgPres_magnetic_ON, t_pressure::lgPres_radiation_ON, t_pressure::lgPres_ram_ON, pressure, t_conv::PressureErrorAllowed, and thermal.

Referenced by InitDynaTimestep(), ParseDynaTime(), and ParseDynaWind().

void DynaCreateArrays

(

void

)

DynaCreateArrays allocate some space needed to save the dynamics structure variables, called from atmdat_readin

References multi_arr< T, d, ALLOC, lgBC >::alloc(), multi_arr< T, d, ALLOC, lgBC >::clone(), DEBUG_ENTRY, dense, EnthalpyDensity, fixit, ipHYDROGEN, iso_sp, t_dense::lgElmtOn, LIMELM, mole_global, t_dynamics::molecules, NISO, t_mole_global::num_calc, t_struc::nzlim, Old_DenMass, Old_density, Old_depth, Old_ednstr, Old_EnthalpyDensity, Old_hiistr, Old_histr, Old_pressure, Old_xLyman_depth, t_dynamics::oldFullDepth, t_dynamics::Rate, multi_arr< T, d, ALLOC, lgBC >::reserve(), t_dynamics::Source, t_dynamics::StatesElem, struc, Upstream_molecules, and UpstreamElem.

Referenced by atmdat_readin().

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void DynaEndZone

(

void

)

DynaEndZone called at end of iteration when advection is turned on

References DEBUG_ENTRY, t_radius::depth, t_dynamics::DivergePresInteg, t_radius::drad, DynaFlux(), fprintf(), ioQQQ, t_dynamics::lgTracePrint, radius, wind, and Wind::windv.

Referenced by ZoneEnd().

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realnum DynaFlux

(

double

depth

)

References DEBUG_ENTRY, dense, t_dynamics::FluxCenter, t_dynamics::FluxIndex, t_dynamics::FluxScale, t_dynamics::lgFluxDScale, pow(), and t_dense::xMassDensity0.

Referenced by DynaEndZone(), PresTotCurrent(), and stepDensity().

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void DynaIonize

(

void

)

DynaIonize, called from ionize to evaluate advective terms for current conditions

References AdvecSpecificEnthalpy, ASSERT, t_dynamics::Cool_r, DEBUG_ENTRY, dense, t_radius::depth, t_dynamics::dHeatdT, Dyn_dr, t_phycon::EnthalpyDensity, EnthalpyDensity, fprintf(), t_dense::gas_phase, t_dynamics::Heat_v, t_thermal::htot, t_dense::IonHigh, t_dense::IonLow, ioQQQ, ipCARBON, ipH_LIKE, ipHYDROGEN, ipUpstream, t_dynamics::isInitialRelaxIteration(), iso_sp, iteration, t_dynamics::lgCoolHeat, t_dense::lgElmtOn, t_dynamics::lgTimeDependentStatic, t_dynamics::lgTracePrint, LIMELM, mole_global, t_dynamics::molecules, NISO, t_mole_global::num_calc, t_iso_sp::numLevels_local, t_struc::nzlim, nzone, Old_depth, t_dynamics::oldFullDepth, phycon, POW2, t_pressure::PresGasCurr, pressure, radius, t_dynamics::Rate, scalingDensity(), t_dynamics::Source, t_dynamics::StatesElem, struc, t_phycon::te, thermal, t_dynamics::timestep, Upstream_molecules, UpstreamElem, wind, Wind::windv, t_dense::xIonDense, and t_dense::xMassDensity.

Referenced by ConvBase().

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void DynaIterEnd

(

void

)

routine called at end of iteration when advection is turned on

References t_dynamics::AdvecLengthInit, ASSERT, t_thermal::ConstTemp, t_dynamics::Cool(), cosmology, t_thermal::ctot, DEBUG_ENTRY, t_radius::depth, t_dynamics::discretization_error, t_dynamics::DivergePresInteg, t_radius::dr_max_last_iter, Dyn_dr, DynaNewStep(), DynaSaveLast(), t_dynamics::error_scale2, fprintf(), GetHubbleFactor(), InitDynaTimestep(), ioQQQ, iphUpstream, ipUpstream, ipyUpstream, t_dynamics::isInitialRelaxIteration(), t_iterations::iter_alloc, iteration, iterations, t_dynamics::lg_coronal_time_init, t_cosmology::lgDo, lgNeedTimestep(), lgPrintDynamics, t_dynamics::lgRecom, t_radius::lgSdrmaxRel, Wind::lgStatic(), t_dynamics::lgStatic_completed, t_thermal::lgTemperatureConstant, lgtime_dt_specified, lgtime_Recom, t_dynamics::lgTimeDependentStatic, t_dynamics::lgTracePrint, t_dynamics::n_initial_relax, nTime_flux, phycon, t_pressure::PresGasCurr, pressure, radius, t_cosmology::redshift_current, t_cosmology::redshift_step, rfield, scalingDensity(), t_radius::sdrmax, StopCalc, t_iterations::StopThickness, t_phycon::te, t_StopCalc::TempHiStopIteration, t_StopCalc::TempLoStopIteration, thermal, t_rfield::time_continuum_scale, time_dt, time_dt_scale_factor, t_dynamics::time_elapsed, time_elapsed_time, t_dynamics::timestep, t_dynamics::timestep_factor, timestep_next(), t_dynamics::timestep_stop, wind, and Wind::windv0.

Referenced by IterRestart().

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void DynaIterStart

(

void

)

routine called at start of iteration when advection is turned on

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), hextra, ioQQQ, t_dynamics::isInitialRelaxIteration(), iteration, lgPrintDynamics, t_dynamics::lgRecom, t_dynamics::lgStatic_completed, t_rfield::lgTimeVary, t_hextra::lgTurbHeatVaryTime, linint(), t_rfield::nShape, nTime_flux, rfield, t_rfield::time_continuum_scale, t_dynamics::time_elapsed, time_elapsed_time, time_flux_ratio, t_dynamics::timestep, t_hextra::TurbHeat, and t_hextra::TurbHeatSave.

Referenced by IterStart().

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STATIC void DynaNewStep

(

void

)

References ASSERT, BIGFLOAT, t_dynamics::convergence_error, t_dynamics::convergence_tolerance, DEBUG_ENTRY, dense, t_struc::depth, t_dynamics::discretization_error, Dyn_dr, t_dynamics::error_scale1, t_dynamics::error_scale2, fprintf(), ioQQQ, ipH_LIKE, ipHYDROGEN, iso_sp, t_dense::lgElmtOn, LIMELM, mole_global, t_struc::molecules, NISO, nOld_zone, t_mole_global::num_calc, t_iso_sp::numLevels_local, t_struc::nzlim, nzone, Old_density, Old_depth, POW2, scalingZoneDensity(), SMALLFLOAT, t_struc::StatesElem, struc, and t_struc::xIonDense.

Referenced by DynaIterEnd().

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void DynaPrtZone

(

void

)

DynaPrtZone - called to print zone results

References AdvecSpecificEnthalpy, ASSERT, t_dynamics::Cool(), t_thermal::ctot, DEBUG_ENTRY, dense, t_phycon::EnergyBinding, t_phycon::EnergyExcitation, t_phycon::EnergyIonization, EnthalpyDensity, fprintf(), t_dynamics::Heat(), ioQQQ, t_struc::nzlim, nzone, phycon, POW2, t_pressure::PresGasCurr, pressure, scalingDensity(), t_timesc::sound_speed_adiabatic, struc, thermal, timesc, wind, Wind::windv, and t_dense::xMassDensity.

Referenced by PrtZone().

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void DynaPunchTimeDep	(	FILE *	ipPnunit,
		const char *	chJob
	)

DynaPunchTimeDep - save info about time dependent solution

Parameters

ipPnunit
*chJob

References cdIonFrac(), cdTemp(), colden, t_colden::colden, column(), cosmology, DEBUG_ENTRY, dense, t_dense::eden, findspecieslocal(), fprintf(), t_dense::gas_phase, ipCOL_HTOT, ipHYDROGEN, t_cosmology::redshift_current, rfield, scalingDensity(), SDIV(), t_rfield::time_continuum_scale, t_dynamics::time_elapsed, t_dynamics::timestep, and TotalInsanity().

Referenced by SaveDo().

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void DynaSave	(	FILE *	ipPnunit,
		char	chJob
	)

DynaSave save info related to advection

Parameters

ipPnunit
chJob

References AdvecSpecificEnthalpy, t_dynamics::Cool(), t_dynamics::dCooldT(), DEBUG_ENTRY, t_radius::depth_mid_zone, t_phycon::EnthalpyDensity, fprintf(), t_dynamics::Heat(), t_thermal::htot, ipHYDROGEN, phycon, radius, t_dynamics::Rate, scalingDensity(), t_dynamics::Source, thermal, and TotalInsanity().

Referenced by SaveDo().

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STATIC void DynaSaveLast

(

void

)

References ASSERT, DEBUG_ENTRY, t_struc::DenMass, dense, t_struc::depth, t_struc::ednstr, EnthalpyDensity, t_dense::gas_phase, t_struc::hiistr, t_struc::histr, ipH_LIKE, ipHYDROGEN, isnan, iso_sp, t_dense::lgElmtOn, LIMELM, mole_global, t_struc::molecules, NISO, nOld_zone, t_mole_global::num_calc, t_iso_sp::numLevels_max, t_struc::nzlim, nzone, Old_DenMass, Old_density, Old_depth, Old_ednstr, Old_EnthalpyDensity, Old_hiistr, Old_histr, Old_pressure, Old_xLyman_depth, t_dynamics::oldFullDepth, t_struc::pressure, scalingZoneDensity(), t_struc::StatesElem, struc, t_struc::xIonDense, and t_struc::xLyman_depth.

Referenced by DynaIterEnd().

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void DynaStartZone

(

void

)

DynaStartZone called at start of iteration when advection is turned on

References AdvecSpecificEnthalpy, ASSERT, BIGFLOAT, DEBUG_ENTRY, dense, t_radius::depth, t_dynamics::discretization_error, t_dynamics::dRad, Dyn_dr, t_dynamics::error_scale2, fp_bound(), fprintf(), ioQQQ, ipH_LIKE, iphUpstream, ipHYDROGEN, ipUpstream, ipyUpstream, isnan, iso_sp, iteration, t_dense::lgElmtOn, t_dynamics::lgTracePrint, LIMELM, t_mole_global::list, MAX2, MIN2, mole, mole_global, NISO, nOld_zone, NULL, t_mole_global::num_calc, t_iso_sp::numLevels_max, nzone, Old_density, Old_depth, Old_EnthalpyDensity, POW2, radius, t_dynamics::Rate, scalingDensity(), SMALLFLOAT, t_dynamics::Source, t_mole_local::species, t_dynamics::Upstream_density, Upstream_molecules, and UpstreamElem.

Referenced by ZoneStart().

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STATIC void InitDynaTimestep

(

)

References advection_set_default(), t_timesc::calc_therm_timesc(), DEBUG_ENTRY, Wind::setStatic(), t_timesc::time_therm_short, timesc, t_dynamics::timestep, t_dynamics::timestep_init, wind, Wind::windv, and Wind::windv0.

Referenced by DynaIterEnd().

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STATIC bool lgNeedTimestep

(

)

References DEBUG_ENTRY, t_dynamics::lgRecom, t_dynamics::lgTimeDependentStatic, and t_dynamics::timestep_init.

Referenced by DynaIterEnd().

void ParseDynaTime

(

Parser &

p

)

ParseDynaTime parse the time command, called from ParseCommands, in dynamics.c 

Parameters

*chCard

References advection_set_default(), ASSERT, cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), Parser::getline(), Parser::getNumberCheckAlwaysLog(), Parser::getNumberCheckAlwaysLogLim(), Parser::getNumberDefaultAlwaysLog(), Parser::hasCommand(), ioQQQ, lgPrintDynamics, lgtime_dt_specified, lgtime_Recom, t_dynamics::lgTimeDependentStatic, t_dynamics::lgTracePrint, Parser::m_lgEOF, Parser::nMatch(), NTIME, nTime_flux, Wind::setStatic(), time_dt, time_dt_scale_factor, time_elapsed_time, time_flux_ratio, t_dynamics::timestep, t_dynamics::timestep_init, t_dynamics::timestep_stop, wind, Wind::windv, and Wind::windv0.

Referenced by ParseCommands().

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void ParseDynaWind

(

Parser &

p

)

Todo:

2 Need to include divergence terms in pressure balance if flux index is != 0

Todo:

2 Need to include divergence terms in pressure balance if flux index is != 0

References advection_set_default(), BIGDOUBLE, cdEXIT, t_dense::chDenseLaw, Wind::comass, DEBUG_ENTRY, dense, EXIT_FAILURE, t_dynamics::FluxCenter, t_dynamics::FluxIndex, t_dynamics::FluxScale, fprintf(), Parser::getNumberCheck(), Parser::getNumberDefault(), Parser::getNumberPlain(), ioQQQ, t_pressure::lgContRadPresOn, Wind::lgDisk, t_dynamics::lgFluxDScale, t_dynamics::lgTracePrint, Wind::lgWindOK, Parser::nMatch(), pow(), pressure, Wind::setBallistic(), Wind::setDefault(), Wind::setStatic(), wind, Wind::windv, and Wind::windv0.

Referenced by ParseCommands().

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STATIC void save_DT	(	double	dtime,
		double	this_fact,
		string &	reason
	)

References cdTemp(), t_save::chHashString, fprintf(), t_save::ipDTout, iteration, iterations, t_trace::lgDrBug, t_save::lgDTHash, t_save::lgDTOn, t_save::lgDTPLst, t_iterations::lgLastIt, t_trace::lgTrace, t_dynamics::n_initial_relax, save, t_dynamics::time_elapsed, TotalInsanity(), and trace.

Referenced by timestep_next().

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STATIC double timestep_next

(

void

)

References cdTemp(), DEBUG_ENTRY, fprintf(), ioQQQ, lgPrintDynamics, t_dynamics::lgRecom, save_DT(), SDIV(), t_dynamics::timestep, t_dynamics::timestep_init, and TotalInsanity().

Referenced by DynaIterEnd().

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Variable Documentation

double AdvecSpecificEnthalpy

static

Referenced by DynaIonize(), DynaPrtZone(), DynaSave(), DynaStartZone(), and t_dynamics::zero().

double Dyn_dr

static

Referenced by DynaIonize(), DynaIterEnd(), DynaNewStep(), and DynaStartZone().

t_dynamics dynamics

Referenced by AbundChange(), check_grid_file(), cloudy(), ConserveEnergy(), ConvBase(), ConvInitSolution(), ConvIterCheck(), CoolEvaluate(), CoolSave(), funjac(), HomogeneousSource(), InitDefaultsPreparse(), ion_trim2(), iso_level(), IterEnd(), IterRestart(), IterStart(), lines_general(), matchGeneric(), mole_eval_dynamic_balance(), Atom_LevelN::operator()(), ParseCoronal(), ParseDont(), ParseSet(), pressureZone(), PresTotCurrent(), PrintRates(), PrintSpectrum(), PrtComment(), PrtZone(), radius_first(), radius_increment(), radius_next(), SaveDo(), SaveHeat(), PresMode::set(), stepDensity(), ZoneEnd(), and ZoneStart().

vector<realnum> EnthalpyDensity

static

Referenced by DynaCreateArrays(), DynaIonize(), DynaPrtZone(), and DynaSaveLast().

int iphUpstream =-1

static

Referenced by DynaIterEnd(), and DynaStartZone().

int ipUpstream =-1

static

Referenced by DynaIonize(), DynaIterEnd(), and DynaStartZone().

int ipyUpstream =-1

static

Referenced by DynaIterEnd(), and DynaStartZone().

const bool lgPrintDynamics = false

static

Referenced by DynaIterEnd(), DynaIterStart(), ParseDynaTime(), and timestep_next().

bool lgtime_dt_specified

static

Referenced by DynaIterEnd(), and ParseDynaTime().

vector<int> lgtime_Recom

static

Referenced by DynaIterEnd(), and ParseDynaTime().

long int nOld_zone

static

Referenced by DynaNewStep(), DynaSaveLast(), DynaStartZone(), and t_dynamics::zero().

const int NTIME = 200

static

Referenced by ParseDynaTime().

long int nTime_flux =0

static

Referenced by DynaIterEnd(), DynaIterStart(), and ParseDynaTime().

vector<realnum> Old_DenMass

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

vector<realnum> Old_density

static

Referenced by DynaCreateArrays(), DynaNewStep(), DynaSaveLast(), and DynaStartZone().

vector<double> Old_depth

static

Referenced by DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaSaveLast(), and DynaStartZone().

vector<realnum> Old_ednstr

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

vector<realnum> Old_EnthalpyDensity

static

Referenced by DynaCreateArrays(), DynaSaveLast(), and DynaStartZone().

multi_arr<realnum,2> Old_gas_phase

static

vector<realnum> Old_hiistr

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

vector<realnum> Old_histr

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

multi_arr<realnum,2> Old_molecules

static

vector<realnum> Old_pressure

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

multi_arr<realnum,4> Old_StatesElem

static

multi_arr<realnum,3> Old_xIonDense

static

vector<realnum> Old_xLyman_depth

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

vector<double> time_dt

static

Referenced by DynaIterEnd(), and ParseDynaTime().

vector<double> time_dt_scale_factor

static

Referenced by DynaIterEnd(), and ParseDynaTime().

vector<double> time_elapsed_time

static

Referenced by DynaIterEnd(), DynaIterStart(), and ParseDynaTime().

vector<double> time_flux_ratio

static

Referenced by DynaIterStart(), and ParseDynaTime().

vector<double> Upstream_molecules

static

Referenced by DynaCreateArrays(), DynaIonize(), and DynaStartZone().

vector<double> UpstreamElem

static

Referenced by DynaCreateArrays(), DynaIonize(), and DynaStartZone().

multi_arr<double,2> UpstreamIon

static

multi_arr<double,3> UpstreamStatesElem

static