#include "cdstd.h"
#include <cstdarg>
#include "cddefines.h"
#include "service.h"
#include "cddrive.h"
#include "called.h"
#include "opacity.h"
#include "rfield.h"
#include "hextra.h"
#include "struc.h"
#include "fudgec.h"
#include "broke.h"
#include "trace.h"
#include "input.h"
#include "save.h"
#include "version.h"
#include "warnings.h"
#include "conv.h"
#include "atmdat.h"
#include "mole.h"
#include "prt.h"
#include "integrate.h"
#include "ran.h"

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Functions
bool	read_whole_line (string &chLine, FILE *ioIN)

void	Split (const string &str, const string &sep, vector< string > &lst, split_mode mode)

void	trimTrailingWhiteSpace (string &str)

void	trimTrailingWhiteSpace (char *str)

void	trimWhiteSpace (string &str)

void	MyAssert (const char file, int line, const char comment)

double	AnuUnit (realnum energy_ryd)

void	ShowMe ()

void	cap4 (char chCAP, const char chLab)

void	uncaps (char *chCard)

void	uncaps (string &chCard)

void	caps (char *chCard)

void	caps (string &chCard)

double	FFmtRead (const char chCard, long int ipnt, long int length, bool *lgEOL)

char	getChar (const string &s, long &p)

void	FPRead (istringstream &iss, const string &s, double &value)

void	IntRead (istringstream &iss, const string &s, long long &value)

void	IntRead (istringstream &iss, const string &s, unsigned long long &value)

long	nMatch (const char chKey, const char chCard)

double	fudge (long int ipnt)

double	powi (double x, long int n)

double	powpq (double x, int p, int q)

long	ipow (long m, long n)

size_t	strnlen (const char *s, size_t maxlen)

size_t	sncatf (char buf, size_t bufSize, const char fmt,...)

size_t	sncatf (ostringstream &str, const char *fmt,...)

void	PrintE82 (FILE *ioOUT, double value)

void	PrintE71 (FILE *ioOUT, double value)

void	PrintE93 (FILE *ioOUT, double value)

NORETURN void	TotalInsanity (void)

NORETURN void	BadRead (void)

sys_float	sexp (sys_float x)

double	sexp (double x)

double	dsexp (double x)

void	TestCode (void)

void	broken (void)

void	fixit_base (const char func, const char file, int line, const char *reason)

void	CodeReview (void)

int	dprintf (FILE fp, const char format,...)

int	fprintf (const Output &stream, const char *format,...)

int	dprintf (const Output &stream, const char *format,...)

int	dbg_printf (int debug, const char *fmt,...)

double	qg32 (double xl, double xu, double(*fct)(double))

void	spsort (realnum x[], long int n, long int iperm[], int kflag, int *ier)

double	csphot (long int inu, long int ithr, long int iofset)

double	plankf (long int ip)

void	CloudyPrintReference ()

void	DatabasePrintReference ()

istream &	SafeGetline (istream &is, string &t)

Variables
const double	pos_pow10 []

const int	max_pow10 = int(sizeof(pos_pow10)/sizeof(pos_pow10[0]) - 1)

const double	neg_pow10 []

const int	min_pow10 = -int(sizeof(neg_pow10)/sizeof(neg_pow10[0]) - 1)

Function Documentation

◆ AnuUnit()

double AnuUnit ( realnum energy )

AnuUnit produce continuum energy in arbitrary units, ip is on C scale

References DEBUG_ENTRY, Energy::get(), and save.

Referenced by AGN_Hemis(), energy(), pseudo_cont::getWl(), Save1Line(), Save1LineData(), save_opacity(), and SaveDo().

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◆ BadRead()

NORETURN void BadRead ( void )

BadRead tried to read internal data and failed

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, NORETURN, and ShowMe().

Referenced by diatomics::H2_Read_hminus_distribution().

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◆ broken()

void broken ( void )

broken set flag saying that the code is broken

References broke, and DEBUG_ENTRY.

Referenced by ion_solver(), and PresTotCurrent().

◆ cap4()

void cap4	(	char *	chCAP,
		const char *	chLab )

cap4 convert first 4 char of input line chLab into chCAP all in caps, null termination

Parameters

chCAP	output string, cap'd first 4 char of chLab,
chLab	with null terminating input string ending with eol

References DEBUG_ENTRY, and toupper().

Referenced by lgCheckMonitors(), and PrtFinal().

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◆ caps() [1/2]

void caps ( char * chCard )

caps convert input command line (through eol) to ALL CAPS

Parameters

chCard - line image as string of characters

References DEBUG_ENTRY, and toupper().

Referenced by cdColm(), cdIonFrac(), cdTemp(), cdTemp(), LinSv::chALabSet(), t_LineSave::findline(), Parser::getElement(), GetJenkins09(), DataParser::getKeywordOptional(), GetMetalsDeplete(), lgCheckMonitors(), LinSv::makeBlend(), Parser::newlineProcess(), ParseAbundances(), Parser::peekNextCommand(), and set_weighting().

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◆ caps() [2/2]

void caps ( string & chCard )

References DEBUG_ENTRY.

◆ CloudyPrintReference()

void CloudyPrintReference ( )

CloudyPrintReference print preferred citation to Cloudy

References fprintf(), Singleton< t_version >::Inst(), ioQQQ, mode_r, open_data(), and SafeGetline().

Referenced by PrtHeader().

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◆ CodeReview()

void CodeReview ( void )

CodeReview - placed next to code that needs to be checked

References broke, and DEBUG_ENTRY.

◆ csphot()

double csphot	(	long int	inu,
		long int	ithr,
		long int	iofset )

csphot returns photoionization cross section from opacity stage using std pointers

Parameters

inu	INU is array index pointing to frequency where opacity is to be evaluated on f not c scale
ithr	ITHR is pointer to threshold
iofset	IOFSET is offset as defined in opac0

References DEBUG_ENTRY, and opac.

Referenced by OpacityAddTotal().

◆ DatabasePrintReference()

void DatabasePrintReference ( )

DatabasePrintReference print some database references

References atmdat, fprintf(), ioQQQ, mode_r, open_data(), and SafeGetline().

Referenced by PrtFinal(), and PrtHeader().

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◆ dbg_printf()

int dbg_printf	(	int	debug,
		const char *	fmt,
			... )

dbg_printf is a debug print routine that was provided by Peter Teuben, as a component from his NEMO package. It offers run-time specification of the level of debugging

References DEBUG_ENTRY, ioQQQ, and trace.

◆ dprintf() [1/2]

int dprintf	(	const Output &	stream,
		const char *	format,
			... )

References DEBUG_ENTRY, fprintf(), and Output::fptr().

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◆ dprintf() [2/2]

int dprintf	(	FILE *	fp,
		const char *	format,
			... )

dprintf – version of fprintf which prepends DEBUG

References DEBUG_ENTRY, and fprintf().

Referenced by DumpCoolStack(), DumpHeatStack(), iso_radiative_recomb_effective(), iter_track::print_status(), qheat_init(), read_UTA_lines(), and Recomb_Seaton59().

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◆ dsexp()

double dsexp ( double x )

dsexp safe exponential function for doubles

Parameters

x

References DEBUG_ENTRY, and DSEXP_LIMIT.

Referenced by FastVoigtH(), ga08_oH2_e(), ga08_oH2_H_b100(), ga08_pH2_e(), ga08_pH2_H_b100(), diatomics::H2_Level_low_matrix(), Hion_coll_ioniz_ratecoef(), hydro_vs_ioniz(), iso_satellite_update(), diatomics::mole_H2_LTE(), mole_partition_function(), setCollRate::operator()(), RT_continuum_shield_fcn_point(), RT_recom_effic(), and diatomics::SolveSomeGroundElectronicLevels().

◆ FFmtRead()

double FFmtRead	(	const char *	chCard,
		long int *	ipnt,
		long int	last,
		bool *	lgEOL )

FFmtRead - the free-format number reader

Parameters

*chCard	string giving the line image
*ipnt	the index for the character in the string where we shall start
last	the number of characters in the string - do not search beyond it
*lgEOL	true if hit end of line with no number

References DEBUG_ENTRY, fprintf(), ioQQQ, max_pow10, min(), min_pow10, neg_pow10, pos_pow10, sign(), tolower(), and TotalInsanity().

Referenced by atmdat_LAMDA_readin(), Badnell_rec_init(), ContBandsCreate(), diatomics::GetIndices(), GetJenkins09(), GetMetalsDeplete(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), HyperfineCreate(), iso_recomb_setup(), bands_file::load(), LoadIsotopes(), FunctLAMDA::operator()(), t_mesh::p_ReadResolution(), ParseAbundances(), read_Helike_cross_sections(), read_SH98_He1_cross_sections(), and ReadCollisionRateTable().

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◆ fixit_base()

void fixit_base	(	const char *	func,
		const char *	file,
		int	line,
		const char *	reason )

fixit set flag saying that this code needs attention, but is not broken, code is in service.cpp

References broke, DEBUG_ENTRY, Singleton< FixitList >::Inst(), and FixitList::list.

Referenced by Fixit::Fixit().

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◆ FPRead()

void FPRead	(	istringstream &	iss,
		const string &	s,
		double &	value )

References DEBUG_ENTRY, getChar(), max_pow10, min_pow10, neg_pow10, pos_pow10, sign(), and UNLIKELY.

Referenced by FPRead(), getTokenOptionalImpl(), and getTokenOptionalImpl().

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◆ fprintf()

int fprintf	(	const Output &	stream,
		const char *	format,
			... )

overloads to allow interception of output

References Output::fptr().

Referenced by abund_starburst(), AbundancesPrt(), AbundancesSet(), t_PredCont::add(), addComment(), LinSv::addComponent(), LinSv::addComponentID(), addKeyword_dbl(), addKeyword_num(), addKeyword_txt(), AGN_He1_CS(), AGN_Hemis(), AtlasCompile(), atmdat_3body(), atmdat_CHIANTI_readin(), atmdat_dielrec_fe(), atmdat_LAMDA_readin(), atmdat_outer_shell(), atmdat_readin(), atmdat_STOUT_readin(), AtmospheresAvail(), Badnell_rec_init(), badprt(), BadRead(), bessel_y0(), bessel_y1(), bessel_yn(), C6cs123(), Ca20cs123(), cdCautions(), cdClock(), cdColm(), cdDrive(), cdErrors(), cdExecTime(), cdGetLineList(), cdH2_colden(), cdInit(), cdInput(), cdIonFrac(), cdLine_ip(), cdMain(), cdMemory(), cdNotes(), cdPrepareExit(), cdPrintCommands(), cdRead(), cdReasonGeo(), cdSPEC2(), cdSurprises(), cdTemp(), cdTemp(), cdWarnings(), ChargTranPun(), ChargTranSumHeat(), t_cpu_i::check_data, band_emission::check_index_fatal(), pseudo_cont::check_index_fatal(), check_LAMDA_comment(), check_mult_path(), t_mesh::CheckMesh(), CheckVal(), t_mole_local::chem_heat(), ChemImportance(), chi2_func(), CHIANTI_Upsilon(), chkCaHeps(), chMolBranch(), CloseSaveFiles(), cloudy(), CloudyPrintReference(), cnewton(), t_ADfA::coll_ion_wrapper(), collision_strength_VF01(), CollisSuppres(), Parser::CommandError(), conorm(), ConserveEnergy(), ContBandsCreate(), ContCreateMesh(), ContCreatePointers(), ContNegative(), ContRate(), ContSetIntensity(), ConvBase(), ConvCrossSect2CollStr(), ConvEdenIoniz(), ConvFail(), ConvInitSolution(), ConvIoniz(), ConvIterCheck(), ConvPresTempEdenIoniz(), ConvTempEdenIoniz(), CoolEvaluate(), CoolHeatError(), CoolHyperfine(), coolpr(), CoolSave(), CoolSum(), CoStarCompile(), CoStarInitialize(), CoStarListModels(), save_img_matrix::createImage_PPM(), CS_l_mixing(), database_readin(), DatabasePrintReference(), dBase_solve(), dBaseAbund(), dmpary(), doData(), doHeader(), doop(), Parser::doSetVar(), dprintf(), dprintf(), DumpAtmosphere(), DumpLine(), DynaEndZone(), DynaIonize(), DynaIterEnd(), DynaIterStart(), DynaNewStep(), DynaPrtZone(), DynaPunchTimeDep(), DynaSave(), DynaStartZone(), e1(), e1_scaled(), e2(), Parser::echo(), t_input::echo(), EchoModel(), eden_sum(), EdenError(), ElectronFractions(), ellpk(), t_debug::enter(), Parser::Error(), DataParser::errorAbort(), ErrorMessage(), esc_2side_base(), esc_CRDwing(), escmase(), expn(), extractLevels(), factorial(), fc2_scl(), Fe26cs123(), FFmtRead(), Parser::FFmtRead(), ffun(), ffun1(), FillExtraLymanLine(), FillJ(), find_arr(), find_solution(), t_LineSave::findline(), findspecies_validate(), fndneg(), fndstr(), fudge(), funjac(), GammaPrt(), GammaPrtRate(), GammaPrtShells(), gauss_legendre(), Energy::get(), get_total_abundance_ions(), Parser::getElement(), Parser::getFirstChunk(), Parser::getFirstChunkRaw(), GetFracPop(), GetHelikeCollisionStrength(), GetHlikeCollisionStrength(), band_cont::getInten(), GetJenkins09(), getLevelsGeneric(), Parser::getline(), GetLineRec(), GetMetalsDeplete(), Parser::getNumberCheckAlwaysLogLim(), GetOptColDen(), GetOptLineInt(), GetOptTemp(), Parser::getPairs(), t_cpu_i::getPathList(), GetPotValues(), GetProbDistr_HighLimit(), GetProbDistr_LowLimit(), getSpeciesGeneric(), Parser::getSymbol(), getTransition(), diatomics::GetXColden(), GrainCharge(), GrainChargeTemp(), GrainCollHeating(), GrainDrift(), GrainDrive(), GrainsInit(), GrainTemperature(), GravitationalPressure(), grid_do(), GridCompile(), GridRetrieveXSPECData(), gridXspec(), GrnStdDpth(), GrnVryDpth(), H21_cm_pops(), diatomics::H2_Colden(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_CollidRateRead(), diatomics::H2_Cooling(), diatomics::H2_Level_low_matrix(), diatomics::H2_LevelPops(), diatomics::H2_ParseSave(), diatomics::H2_Prt_column_density(), diatomics::H2_Prt_Zone(), diatomics::H2_PrtDepartCoef(), diatomics::H2_Punch_line_data(), diatomics::H2_PunchDo(), diatomics::H2_RadPress(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_Read_LTE_cooling_per_H2(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), diatomics::H2_Reset(), diatomics::H2_X_coll_rate_evaluate(), H_Einstein_A_log10(), H_photo_cs_log10(), HaardtMadauCompile(), HCSAR_interp(), HCTIon(), HCTRecom(), He2cs123(), he_1trans(), HeatSum(), helike_energy(), Parser::help(), highen(), HomogeneousSource(), t_ADfA::hpfit(), Hydcs123(), hydro_energy(), HydroEinstA(), HydroLevel(), HydroRecCool(), HyperfineCreate(), hypho(), IncidentContinuumHere(), diatomics::init(), load_balance::init(), t_mole_global::init(), t_yield::init_yield(), InitEmissivities(), InitGrid(), InitIndexArrays(), InitSimPostparse(), InterpolateGridCoStar(), InterpolateModel(), InterpolateModel(), InterpolateModelCoStar(), InterpolateRectGrid(), inv_ufunct(), ion_photo(), ion_recom_calculate(), ion_recomb(), ion_recombAGN(), ion_trim(), ion_trim2(), ion_wrapper(), IonHelium(), IonHydro(), IonNelem(), ipContEnergy(), ipLineEnergy(), ipoint(), ipShells(), iso_cascade(), iso_collide(), iso_continuum_lower(), iso_cool(), iso_create(), iso_get_collision_strength(), iso_ionize_recombine(), iso_level(), iso_photo(), iso_prt_pops(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_recomb_setup(), iso_renorm(), iso_set_ion_rates(), iso_solve(), iso_update_num_levels(), iter_end_check(), IterEnd(), IterRestart(), IterStart(), KhaireSrianandCompile(), Kurucz79Compile(), t_debug::leave(), lfactorial(), lgCheckMonitors(), lgCompileAtmosphere(), lgConvTemp(), lgCoolNetConverge(), lgElemsConserved(), lgNetEdenSrcSmall(), lgNucleiConserved(), lgReactBalance(), lgReadAtmosphereHead(), lgReadAtmosphereTail(), lgStatesConserved(), lgValidModel(), LimitSh(), lines(), lines_continuum(), lines_general(), lines_helium(), lines_hydro(), lines_iron_Ka(), lines_table(), LineStackCreate(), bands_file::load(), LoadIsotopes(), main(), LinSv::makeBlend(), MakeInputLine(), map_do(), maybeNumber(), mc_escape(), t_mean::MeanIon(), mie_auxiliary(), mie_cs(), mie_find_slope(), mie_next_line(), mie_read_mix(), mie_read_number(), mie_read_ocn(), mie_read_opc(), mie_read_rfi(), mie_read_szd(), mie_repair(), mie_step(), mie_write_opc(), MihalasCompile(), molcol(), mole_check_reverse_reactions(), mole_cmp_num_in_out_reactions(), mole_create_react(), mole_dominant_rates(), mole_eval_balance(), mole_generate_isotopologue_reactions(), mole_h2_grain_form(), diatomics::mole_H2_LTE(), mole_h_rate_diagnostics(), mole_h_reactions(), mole_print_species_reactions(), mole_rk_bigchange(), mole_save(), mole_solve(), mole_system_error(), mole_update_rks(), mole_update_species_cache(), my_Integrand_VF01_E< P >::my_Integrand_VF01_E(), MyAssert(), Ne10cs123(), newreact(), newspecies(), newton_step(), Parser::NoNumb(), OpacityAddTotal(), OpacityCreate1Element(), OpacityCreateAll(), OpacityCreateReilMan(), Atom_LevelN::operator()(), FunctLAMDA::operator()(), setCollRate::operator()(), optimize_do(), optimize_func(), optimize_phymir(), t_cpu_i::p_assertValidPath(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), Flux::p_InternalFluxUnit(), t_gaunt::p_read_table(), t_mesh::p_ReadResolution(), EnergyEntry::p_set_ip(), t_mesh::p_SetupMesh(), DataParser::p_showLocation(), parse_chemical(), parse_reaction(), parse_save_average(), Parse_Save_Line_RT(), parse_species_label(), parse_udfa(), ParseAbsMag(), ParseAbundances(), ParseAge(), ParseAgn(), ParseAperture(), ParseBackgrd(), ParseBlackbody(), ParseBremsstrahlung(), ParseChemistry(), ParseCMB(), ParseCommands(), ParseCompile(), ParseConstant(), ParseCoronal(), ParseCosmicRays(), ParseCosmology(), ParseCovering(), ParseCrashDo(), ParseDarkMatter(), ParseDatabase(), ParseDatabaseH2(), ParseDatabaseISO(), ParseDielectronic(), ParseDiffuse(), ParseDLaw(), ParseDont(), ParseDynaTime(), ParseDynaWind(), ParseElement(), ParseEnergy(), ParseExtinguish(), ParseF_nu(), ParseFail(), ParseFill(), ParseFluc(), ParseForceTemperature(), ParseGlobule(), ParseGrain(), ParseGravity(), ParseGrid(), ParseHDEN(), ParseHeLike(), ParseHExtra(), ParseHydrogen(), ParseIllumination(), ParseInit(), ParseIntensity(), ParseInterp(), ParseIonPar(), ParseLaser(), ParseLineList(), ParseLuminosity(), ParseMagnet(), ParseMap(), ParseMetal(), ParseMonitorResults(), ParseNorm(), ParseNumber(), ParseOptimize(), ParsePGrains(), ParsePhi(), ParsePowerlawContinuum(), ParsePrint(), ParseQH(), ParseRadius(), ParseRangeOption(), ParseRatio(), ParseSave(), ParseSet(), ParseSpecies(), ParseSphere(), ParseStop(), ParseTable(), ParseTLaw(), ParseTolerance(), ParseTrace(), ParseTurbulence(), PlanckIntegral(), plot_sparsity(), pnegopc(), PntForLine(), PressureChange(), PresTotCurrent(), bad_assert::print(), print_delimiter(), iter_track::print_history(), t_cpu_i::PrintBacktrace(), PrintCenterLine(), t_cpu_i::printDataPath(), PrintE71(), PrintE82(), PrintE93(), Parser::PrintLine(), PrintLineDataHeader(), PrintRates(), PrintRatio(), PrintShortZero(), PrintSpectrum(), prme(), process_output(), LinSv::prt(), LinSv::prt_blend(), prt_constants(), t_physconst::prt_constants(), prt_header_cols(), prt_line_err(), prt_line_inlist(), prt_LineLabels(), prt_smooth_predictions(), prt_trans_opc_debug(), t_wavl::prt_wl(), PrtAllTau(), PrtColumns(), PrtComment(), PrtElem(), PrtFinal(), PrtHeader(), PrtHydroTrace1(), PrtHydroTrace1a(), isotope::prtIso(), isotope::prtIsoPairs(), PrtLinePres(), PrtLineSum(), prtLineType(), PrtMacros(), PrtMeanIon(), prtmet(), PrtOneMonitor(), prtPunOpacSummary(), t_prt_matrix::prtRates(), PrtTwoPhotonEmissCoef(), PrtZone(), punchFITS_EnergyHeader(), punchFITS_GenericHeader(), punchFITS_ParamData(), punchFITS_ParamHeader(), punchFITS_PrimaryHeader(), punchFITS_SpectraData(), punchFITS_SpectraHeader(), punchFITSimg_ExtensionHeader(), punchFITSimg_PrimaryHeader(), qheat(), qintr(), r1mach(), t_ADfA::rad_rec(), radius_first(), radius_increment(), radius_next(), RauchCompile(), RauchInitialize(), RauchReadMPP(), read_data(), read_Helike_cross_sections(), read_Hummer_Storey(), read_level2_lines(), read_mewe_gbar(), read_SH98_He1_cross_sections(), read_UTA_lines(), t_input::readarray(), ReadBadnellAIData(), Parser::readLaw(), Parser::readList(), ReadTable(), RebinQHeatResults(), rec6j(), t_conv::register_(), renorm_solution(), RT_continuum(), RT_continuum_shield_fcn(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_line_escape(), RT_line_one_fine(), RT_line_one_tau_reset(), RT_line_one_tauinc(), RT_line_pumping(), RT_OTS(), RT_OTS_AddLine(), RT_OTS_ChkSum(), RT_OTS_PrtRate(), RT_recom_effic(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), RTesc_lya_1side(), S2Aul(), SanityCheck(), SanityCheckBegin(), SanityCheckGaunt(), Save1Line(), Save1LineData(), save_average(), save_DT(), save_line(), Save_Line_RT(), save_opacity(), SaveAllSpeciesLabelsLevels(), SaveDo(), saveFITSfile(), SaveGaunts(), SaveGrid(), SaveHeat(), SaveLineData(), SaveLineIntensity(), SaveLineStuff(), SaveResults(), SaveSpecial(), SaveSpecies(), SaveSpeciesBands(), SaveSpeciesHeader(), SaveSpeciesLines(), SaveSpeciesOne(), SaveSpeciesOptDep(), SaveSpeciesPseudoCont(), ScaleAllDensities(), ScanProbDistr(), search_limit(), SecIoniz(), Energy::set(), set_weighting(), set_xIntensity(), setIsoNelemFlag(), SetLimits(), setProperties(), t_prt_matrix::setSpecies(), GroupMap::setup(), setXtraRatesO1(), Parser::showLocation(), ShowMe(), size_distr(), solve_system(), diatomics::SolveExcitedElectronicLevels(), solveions(), speciesCheck(), speciesOff(), spectral_to_chemical(), spline_cubic_set(), Split(), StandardEnergyUnit(), StandardFluxUnit(), StarburstCompile(), StarburstInitialize(), states_nelemfill(), stepDensity(), StoutCollRate(), StuffCommand(), StuffComment(), band_emission::sumBand(), pseudo_cont::sumBand(), SumDensities(), t_ADfA::t_ADfA(), t_physconst::t_physconst(), DepthTable::tabval(), TempChange(), TempChange(), TempInterp(), test_cdTemp_molecules(), test_expn(), test_isMolecule(), tfidle(), timestep_next(), TlustyCompile(), TotalInsanity(), totlin(), trim_levels(), uderiv(), ufunct(), UpdatePot(), UpdateUTAs(), validate_magic_number_1arg(), validate_magic_number_3arg(), t_mesh::ValidateEdges(), vary_input(), DataParser::warning(), WernerCompile(), WMBASICCompile(), WriteASCIIData(), WriteASCIIHead(), XERBLA(), xerror_(), y0b01(), Yfunc(), Yfunc(), zero(), zoneDensity(), and ZoneStart().

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◆ fudge()

double fudge ( long int ipnt )

fudge enter fudge factors, or some arbitrary number, with fudge command return value is the fudge factor fudge(-1) queries the routine for the number of fudge parameters that were entered, zero returned if none

Parameters

ipnt	integer saying which of the possible numbers on the fudge command to use - 0 would be the first

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), fudgec, and ioQQQ.

Referenced by GrainChargeTemp(), and InitEmissivities().

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◆ getChar()

char getChar	(	const string &	s,
		long &	p )

inline

References LIKELY.

Referenced by FPRead(), IntRead(), and IntRead().

◆ IntRead() [1/2]

void IntRead	(	istringstream &	iss,
		const string &	s,
		long long &	value )

References DEBUG_ENTRY, getChar(), and sign().

Referenced by getTokenOptionalImpl(), getTokenOptionalImpl(), getTokenOptionalImpl(), getTokenOptionalImpl(), getTokenOptionalImpl(), getTokenOptionalImpl(), IntRead(), IntRead(), IntRead(), and IntRead().

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◆ IntRead() [2/2]

void IntRead	(	istringstream &	iss,
		const string &	s,
		unsigned long long &	value )

References DEBUG_ENTRY, and getChar().

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◆ ipow()

long ipow	(	long	m,
		long	n )

ipow

Returns: m^n

References DEBUG_ENTRY, and is_odd().

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◆ MyAssert()

void MyAssert	(	const char *	file,
		int	line,
		const char *	comment )

MyAssert a version of assert that fails gracefully

Parameters

*file
line

References conv, DEBUG_ENTRY, fnzone, fprintf(), ioQQQ, iteration, nzone, ShowMe(), and TorF().

Referenced by cdMain().

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◆ nMatch()

long nMatch	(	const char *	chKey,
		const char *	chCard )

nMatch determine whether match to a keyword occurs on command line, return value is 0 if no match, and position of match within string if hit

Parameters

*chKey
*chCard

References ASSERT, DEBUG_ENTRY, NULL, and strstr_s().

Referenced by ParseGrain(), StandardEnergyUnitNoAbort(), StandardFluxUnit(), and vary_input().

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◆ plankf()

double plankf ( long int ip )

plankf evaluate Planck function for any cell at current electron temperature

Parameters

ip

References DEBUG_ENTRY, POW2, and rfield.

Referenced by SaveDo().

◆ powi()

double powi	(	double	x,
		long int	n )

powi raise x to integer power

References DEBUG_ENTRY, and is_odd().

Referenced by bessel_jn(), CollisSuppres(), ContCreatePointers(), CS_PercivalRichards78(), DebyeDeriv(), expn(), GrainCharge(), H21_cm_pops(), t_ADfA::H_rad_rec(), highen(), Hion_coll_ioniz_ratecoef(), hrii_log(), hydro_transprob(), hydro_transprob_collapsed_to_collapsed(), HydroRecCool(), InitEmissivities(), iso_rad_rec_cooling_extra(), iso_state_lifetime(), MolDissocCrossSection(), ParseBackgrd(), PlanckIntegral(), pow(), pow(), pow(), pow(), powpq(), PrtComment(), rayleh(), S2Aul(), SaveSpecial(), setXtraRatesFe2(), size_distr(), t_hydro_tbl::tp(), and t_hydro_tbl::tp().

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◆ powpq()

double powpq	(	double	x,
		int	p,
		int	q )

powpq raise x to rational power p/q

References DEBUG_ENTRY, pow(), and powi().

Referenced by atmdat_dielrec_fe(), ContSetIntensity(), CS_l_mixing_PS64(), CS_l_mixing_PS64_expI(), CS_l_mixing_VOS12(), da(), eeBremsCooling(), eeBremsSpectrum(), elec_esc_length(), ffun1(), GetHelikeCollisionStrength(), GrainScreen(), GrainsInit(), H21cm_electron(), he_1trans(), Hydcs123(), hydro_Fujimoto_deexcit(), hydro_vanRegemorter_deexcit(), hydro_vs_coll_str(), hydro_vs_deexcit(), hydro_vs_ioniz(), ion_recom_calculate(), iso_collide(), iso_continuum_lower(), iso_get_collision_strength(), iso_radrecomb_from_cross_section(), iso_satellite_update(), lgCheckMonitors(), lgValidModel(), mole_partition_function(), my_Integrand_VF01_E< P >::my_Integrand_VF01_E(), OpacityCreateAll(), PrtZone(), qheat_init(), t_ADfA::rec_lines(), Recomb_Seaton59(), RT_stark(), X1Int(), X2Int(), and Yan_H2_CS().

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◆ PrintE71()

void PrintE71	(	FILE *	ioOUT,
		double	value )

print with 1p,e8.1 format onto stream FILE

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by PrtFinal().

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◆ PrintE82()

void PrintE82	(	FILE *	ioOUT,
		double	value )

print with 1p,e8.2 format onto stream FILE all are located in printe82.c

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by AbundancesSet(), IonHydro(), PrtAllTau(), PrtFinal(), and PrtHeader().

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◆ PrintE93()

void PrintE93	(	FILE *	ioOUT,
		double	value )

print with 1p,e9.3 format onto stream FILE

References DEBUG_ENTRY, exp10(), fprintf(), and frac().

Referenced by HydroLevel(), PrtAllTau(), PrtFinal(), PrtHeader(), PrtHydroTrace1a(), PrtZone(), and save_opacity().

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◆ qg32()

double qg32	(	double	xl,
		double	xu,
		double(*	fct )(double) )

32 point gaussian quadrature integration

Parameters

xl	lower limit to integration
xu	- upper limit to integration
(*fct)	- pointer to routine to be integrated, arg is x val

References DEBUG_ENTRY.

Referenced by AngerJ(), CS_ThermAve_PR78(), iso_radrecomb_from_cross_section(), Recomb_Seaton59(), and SanityCheckBegin().

◆ read_whole_line()

bool read_whole_line	(	string &	chLine,
		FILE *	ioIN )

read_whole_line - safe version of fgets - read an arbitrary length line into C++ string, returns false and an empty string if it cannot read a line

Parameters

string&	chLine - C++ string where the line image will be stored
FILE	*ioIN a previously opened file handle, will read from here

References DEBUG_ENTRY, and NULL.

Referenced by atmdat_LAMDA_readin(), Badnell_rec_init(), cdMain(), ContBandsCreate(), CoStarInitialize(), GetJenkins09(), GetMetalsDeplete(), diatomics::H2_CollidRateRead(), diatomics::H2_Read_hminus_distribution(), diatomics::H2_Read_LTE_cooling_per_H2(), diatomics::H2_ReadDissocEnergies(), diatomics::H2_ReadDissprob(), diatomics::H2_ReadEnergies(), diatomics::H2_ReadTransprob(), HyperfineCreate(), t_yield::init_yield(), iso_recomb_setup(), lgReadAtmosphereHead(), bands_file::load(), LoadIsotopes(), mie_next_line(), t_mesh::p_ReadResolution(), ParseAbundances(), ParseInitFile(), RauchInitialize(), read_Helike_cross_sections(), read_level2_lines(), read_mewe_gbar(), diatomics::Read_Mol_Diss_cross_sections(), read_SH98_He1_cross_sections(), read_UTA_lines(), ReadCollisionRateTable(), StarburstInitialize(), validate_magic_number_1arg(), and validate_magic_number_3arg().

◆ SafeGetline()

istream & SafeGetline	(	istream &	is,
		string &	t )

Referenced by CloudyPrintReference(), and DatabasePrintReference().

◆ sexp() [1/2]

double sexp ( double x )

References DEBUG_ENTRY, and SEXP_LIMIT.

◆ sexp() [2/2]

sys_float sexp ( sys_float x )

sexp safe exponential function

References DEBUG_ENTRY, and SEXP_LIMIT.

Referenced by atmdat_dielrec_fe(), atom_level2(), Badnell_DR_rate_eval(), ChargTranEval(), ColStrGBar(), extin(), ffun1(), GetAveVelocity(), t_rfield::getCoarseTransCoef(), GetDopplerWidth(), GrnStdDpth(), H21_cm_pops(), H21cm_electron(), diatomics::H2_CollidRateEvalAll(), diatomics::H2_LevelPops(), H2_vib_dist(), HCTRecom(), highen(), hmrate4(), diatomics::init(), ion_recom_calculate(), IterEnd(), IterRestart(), IterStart(), lines_continuum(), mole_h2_grain_form(), mole_h_reactions(), ParseAgn(), PrtFinal(), RT_continuum(), SaveDo(), and shieldFederman().

◆ ShowMe()

void ShowMe ( void )

print comment asking to show output to me

References cdCautions(), cdPrintCommands(), cdWarnings(), conv, DEBUG_ENTRY, findspecieslocal(), fprintf(), h2, hextra, input, Singleton< t_version >::Inst(), ioQQQ, NULL, ran, and warnings.

Referenced by BadRead(), ConserveEnergy(), ContSetIntensity(), ConvEdenIoniz(), ConvFail(), ConvTempEdenIoniz(), CoolEvaluate(), coolpr(), dBase_solve(), escmase(), GetFracPop(), GrainCharge(), diatomics::H2_ReadTransprob(), HeatSum(), ipoint(), iso_level(), iso_radiative_recomb(), iter_end_check(), lgCheckMonitors(), lines(), MyAssert(), PresTotCurrent(), PrintRates(), prt_smooth_predictions(), PrtComment(), radius_first(), RT_continuum(), RT_line_escape(), RT_tau_init(), SanityCheckBegin(), SaveDo(), TotalInsanity(), and zoneDensity().

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◆ sncatf() [1/2]

size_t sncatf	(	char *	buf,
		size_t	bufSize,
		const char *	fmt,
			... )

References strnlen().

Referenced by diatomics::H2_ParseSave(), parse_save_average(), and ParseSave().

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◆ sncatf() [2/2]

size_t sncatf	(	ostringstream &	str,
		const char *	fmt,
			... )

References DEBUG_ENTRY.

◆ Split()

void Split	(	const string &	str,
		const string &	sep,
		vector< string > &	lst,
		split_mode	mode )

Split: split a string into substrings using "sep" as separator

References cdEXIT, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, SPM_KEEP_EMPTY, and SPM_STRICT.

Referenced by cdMain(), HyperfineCreate(), t_cpu_i::initPath(), and t_version::t_version().

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◆ spsort()

void spsort	(	realnum	x[],
		long int	n,
		long int	iperm[],
		int	kflag,
		int *	ier )

spsort netlib routine to sort array returning sorted indices

Parameters

x[]	input array to be sorted
n	number of values in x
iperm[]	permutation output array
kflag	flag saying what to do - 1 sorts into increasing order, not changing
kflag	the original routine
*ier	error condition, should be 0

References DEBUG_ENTRY.

Referenced by CoolSave(), diatomics::H2_PunchDo(), PrintSpectrum(), PrtLinePres(), SanityCheckBegin(), and SaveHeat().

◆ strnlen()

size_t strnlen	(	const char *	s,
		size_t	maxlen )

Referenced by sncatf().

◆ TestCode()

void TestCode ( void )

TestCode set flag saying that test code is in place

References DEBUG_ENTRY, and lgTestCodeCalled.

◆ TotalInsanity()

NORETURN void TotalInsanity ( void )

TotalInsanity general error handler for something that cannot happen, exits

References cdEXIT, cpu, DEBUG_ENTRY, EXIT_FAILURE, fprintf(), ioQQQ, NORETURN, NULL, and ShowMe().

Referenced by AbundancesPrt(), iterator< bool, 2 >::alloc(), atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_readin(), avg_shield(), Badnell_rec_init(), t_gaunt::brems_cool(), t_gaunt::brems_opac(), t_gaunt::brems_rt(), cdInit(), cdMain(), CHIANTI_Upsilon(), t_ADfA::coll_ion_wrapper(), CollisSuppres(), conorm(), ContSetIntensity(), ConvInitSolution(), ConvIterCheck(), ConvTempEdenIoniz(), CoolEvaluate(), CoolSave(), cross_section(), t_hydro_tbl::cs(), CSresolver(), database_readin(), dBase_solve(), dBaseUpdateCollCoeffs(), DebyeDeriv(), DynaPunchTimeDep(), DynaSave(), EdenChange(), F21_mx(), fc2(), FFmtRead(), multi_geom< d, ALLOC >::finalize(), FindIndex(), t_LineSave::findline(), flxCell(), ForbiddenAuls(), ForcePass(), get_iso_statw(), GetHelikeCollisionStrength(), GetHlikeCollisionStrength(), getIntenTypeStr(), GrainChargeTemp(), GrainMakeDiffuse(), GravitationalPressure(), GrnStdDpth(), H21_cm_pops(), diatomics::H2_LevelPops(), diatomics::H2_Read_LTE_cooling_per_H2(), HaardtMadauInterpolate(), he_1trans(), helike_quantum_defect(), diatomics::init(), init_seed(), t_yield::init_yield(), InterpolateGridCoStar(), InterpolateModel(), InterpolateRectGrid(), irsl2ind(), iso_assign_quantum_numbers(), iso_create(), iso_cross_section(), iso_get_collision_strength(), iso_get_total_num_levels(), iso_radrecomb_from_cross_section(), iter_end_check(), IterEnd(), lgCheckMonitors(), DataParser::lgEODMarker(), lgReadAtmosphereTail(), lines(), t_mole_global::make_species(), t_mean::MeanIon(), mie_auxiliary(), mie_auxiliary2(), mie_cs_size_distr(), mie_read_mix(), mie_read_rfi(), mie_repair(), mie_write_opc(), mole_effects(), mole_generate_isotopologue_reactions(), mole_h_reactions(), my_Integrand_VF01_E< P >::my_Integrand_VF01_E(), Opacity_iso_photo_cs(), Atom_LevelN::operator()(), optimize_do(), phymir_state< X, Y, NP, NSTR >::p_barrier(), phymir_state< X, Y, NP, NSTR >::p_execute_job(), DataParser::p_isComment(), t_gaunt::p_setup_brems(), t_ran::p_u64(), pah2_fun(), pah3_fun(), ParseBlackbody(), ParseCosmology(), ParseCrashDo(), ParseDatabaseH2(), ParseDatabaseISO(), ParseGrain(), ParseTable(), PrintSpectrum(), PrtColumns(), PrtComment(), PrtFinal(), PrtMeanIon(), radius_first(), radius_next(), RauchInitialize(), read_SH98_He1_cross_sections(), read_UTA_lines(), ReadBadnellAIData(), rfield_opac_alloc(), RT_continuum(), RT_continuum_shield_fcn_point(), RT_line_driving(), RT_OTS_ChkSum(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), save_average(), save_DT(), SaveDo(), SaveFilesInit(), SaveLineStuff(), SaveSpecies(), SaveSpeciesPseudoCont(), sg(), size_distr(), StarburstInitialize(), states_nelemfill(), Integrator< Integrand, Method >::sum(), VecIntegrator< Integrand, Method >::sum(), SumDensities(), t_ran::t_ran(), t_version::t_version(), tbl_fun(), tfidle(), timestep_next(), TlustyInterpolate(), TotalInsanityAsStub(), vary_input(), zoneDensity(), and ZoneStart().

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◆ trimTrailingWhiteSpace() [1/2]

void trimTrailingWhiteSpace ( char * str )

◆ trimTrailingWhiteSpace() [2/2]

void trimTrailingWhiteSpace ( string & str )

Referenced by cdColm(), cdIonFrac(), cdMain(), cdRead(), cdTemp(), cdTemp(), LinSv::chALabSet(), database_readin(), t_LineSave::findline(), DataParser::getLineID(), ParseMonitorResults(), ParseSave(), ParseSet(), ParseStop(), and Parser::setline().

◆ trimWhiteSpace()

void trimWhiteSpace ( string & str )

Referenced by cdMain().

◆ uncaps() [1/2]

void uncaps ( char * chCard )

uncaps convert input command line (through eol) to all lowercase

Parameters

chCard - line image as string of characters

References DEBUG_ENTRY, and tolower().

Referenced by atmdat_CHIANTI_readin(), atmdat_STOUT_readin(), and db_basename_to_spectral().

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◆ uncaps() [2/2]

void uncaps ( string & chCard )

References DEBUG_ENTRY.

Variable Documentation

◆ max_pow10

const int max_pow10 = int(sizeof(pos_pow10)/sizeof(pos_pow10[0]) - 1)

Referenced by exp10i(), FFmtRead(), and FPRead().

◆ min_pow10

const int min_pow10 = -int(sizeof(neg_pow10)/sizeof(neg_pow10[0]) - 1)

Referenced by exp10i(), FFmtRead(), and FPRead().

◆ neg_pow10

const double neg_pow10[]

Referenced by exp10i(), FFmtRead(), and FPRead().

◆ pos_pow10

const double pos_pow10[]

Referenced by exp10i(), FFmtRead(), and FPRead().

Functions

Variables

Function Documentation

◆ AnuUnit()

◆ BadRead()

◆ broken()

◆ cap4()

◆ caps() [1/2]

◆ caps() [2/2]

◆ CloudyPrintReference()

◆ CodeReview()

◆ csphot()

◆ DatabasePrintReference()

◆ dbg_printf()

◆ dprintf() [1/2]

◆ dprintf() [2/2]

◆ dsexp()

◆ FFmtRead()

◆ fixit_base()

◆ FPRead()

◆ fprintf()

◆ fudge()

◆ getChar()

◆ IntRead() [1/2]

◆ IntRead() [2/2]

◆ ipow()

◆ MyAssert()

◆ nMatch()

◆ plankf()

◆ powi()

◆ powpq()

◆ PrintE71()

◆ PrintE82()

◆ PrintE93()

◆ qg32()

◆ read_whole_line()

◆ SafeGetline()

◆ sexp() [1/2]

◆ sexp() [2/2]

◆ ShowMe()

◆ sncatf() [1/2]

◆ sncatf() [2/2]

◆ Split()

◆ spsort()

◆ strnlen()

◆ TestCode()

◆ TotalInsanity()

◆ trimTrailingWhiteSpace() [1/2]

◆ trimTrailingWhiteSpace() [2/2]

◆ trimWhiteSpace()

◆ uncaps() [1/2]

◆ uncaps() [2/2]

Variable Documentation

◆ max_pow10

◆ min_pow10

◆ neg_pow10

◆ pos_pow10