t_mole_local Class Reference

#include <mole.h>

Inheritance diagram for t_mole_local:

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Public Member Functions
void	alloc ()
void	zero ()
void	comment (t_warnings &)
const char *	chName () const
void	set_ion_locations ()
void	set_isotope_abundances (void)
double	sink_rate_tot (const char chSpecies[]) const
double	sink_rate_tot (const molecule *const sp) const
double	sink_rate (const molecule *const sp, const mole_reaction &rate) const
double	sink_rate (const molecule *const sp, const char buf[]) const
double	source_rate_tot (const char chSpecies[]) const
double	source_rate_tot (const molecule *const sp) const
double	dissoc_rate (const char chSpecies[]) const
double	chem_heat (void) const
double	findrk (const char buf[]) const
double	findrate (const char buf[]) const
Public Member Functions inherited from module
	module ()
virtual	~module ()

Public Attributes
double	grain_area
double	grain_density
double	grain_saturation
double	elec
multi_arr< double, 2 >	source
multi_arr< double, 2 >	sink
multi_arr< realnum, 3 >	xMoleChTrRate
valarray< class molezone >	species
vector< double >	reaction_rks
vector< double >	old_reaction_rks
long	old_zone

Member Function Documentation

alloc()

void t_mole_local::alloc

(

)

References LIMELM, sink, source, and xMoleChTrRate.

chem_heat()

double t_mole_local::chem_heat

(

void

)

const

Todo

Once the H chem is merged with the C chem, then we will have the chemical heating rate for all reactions. This is only a subset and, thusfar, not actually used in getting the total heating. Tests with pdr_leiden_hack_f1.in show that this heating rate can be up to 10% of the total heating

References DEBUG_ENTRY, findspecies(), molecule::form_enthalpy, fprintf(), mole_reaction::index, molecule::index, ioQQQ, mole_reaction::label, mole_reaction::nproducts, mole_reaction::nreactants, NULL, nzone, mole_reaction::products, mole_priv::reactab, mole_reaction::reactants, reaction_rks, mole_reaction::rvector, and species.

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chName()

const char * t_mole_local::chName ( ) const

inlinevirtual

Implements module.

comment()

void t_mole_local::comment ( t_warnings & )

inlinevirtual

Implements module.

dissoc_rate()

double t_mole_local::dissoc_rate

(

const char

chSpecies[]

)

const

returns the photodissociation rate per unit volume [cm^-3 s^-1] producing monatomic species chSpecies. Excludes photoionizations of other monatomic species, e.g. N-,PHOTON=>N,e-

returns the photodissociation rate per unit volume [cm^-3 s^-1] of species chSpecies

References ASSERT, chSpecies, DEBUG_ENTRY, findspecies(), mole_reaction::index, molecule::index, molecule::isMonatomic(), molecule::nNuclide, mole_reaction::nproducts, mole_reaction::nreactants, null_mole, mole_reaction::products, mole_priv::reactab, mole_reaction::reactants, reaction_rks, and species.

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findrate()

double t_mole_local::findrate

(

const char

buf[]

)

const

References DEBUG_ENTRY, mole_reaction::index, molecule::index, mole_findrate_s(), mole_reaction::nreactants, mole_reaction::reactants, reaction_rks, and species.

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findrk()

double t_mole_local::findrk

(

const char

buf[]

)

const

References ASSERT, DEBUG_ENTRY, mole_reaction::index, isnan, mole_findrate_s(), and reaction_rks.

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set_ion_locations()

void t_mole_local::set_ion_locations

(

)

References ASSERT, DEBUG_ENTRY, dense, deut, findspecieslocal(), molezone::location, mole_global, nuclide_list, and species.

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set_isotope_abundances()

void t_mole_local::set_isotope_abundances

(

void

)

References DEBUG_ENTRY, nuclide_list, NULL, and species.

sink_rate() [1/2]

double t_mole_local::sink_rate	(	const molecule *const	sp,
		const char	buf[] ) const

References mole_findrate_s(), and sink_rate().

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sink_rate() [2/2]

double t_mole_local::sink_rate	(	const molecule *const	sp,
		const mole_reaction &	rate ) const

References mole_reaction::a, DEBUG_ENTRY, molecule::index, mole_reaction::nreactants, NULL, mole_reaction::reactants, mole_reaction::rk(), mole_reaction::rvector, mole_reaction::rvector_excit, and species.

Referenced by sink_rate(), and sink_rate_tot().

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sink_rate_tot() [1/2]

double t_mole_local::sink_rate_tot

(

const char

chSpecies[]

)

const

References chSpecies, DEBUG_ENTRY, findspecies(), and sink_rate_tot().

Referenced by sink_rate_tot().

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sink_rate_tot() [2/2]

double t_mole_local::sink_rate_tot

(

const molecule *const

sp

)

const

References DEBUG_ENTRY, mole_priv::reactab, and sink_rate().

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source_rate_tot() [1/2]

double t_mole_local::source_rate_tot

(

const char

chSpecies[]

)

const

References chSpecies, DEBUG_ENTRY, findspecies(), and source_rate_tot().

Referenced by source_rate_tot().

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source_rate_tot() [2/2]

double t_mole_local::source_rate_tot

(

const molecule *const

sp

)

const

References mole_reaction::a, DEBUG_ENTRY, molecule::index, mole_reaction::nproducts, mole_reaction::nreactants, NULL, mole_reaction::products, mole_reaction::pvector, mole_reaction::pvector_excit, mole_priv::reactab, mole_reaction::reactants, mole_reaction::rk(), and species.

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zero()

void t_mole_local::zero ( void )

virtual

Implements module.

References mole_global, old_reaction_rks, reaction_rks, sink, source, species, and xMoleChTrRate.

Member Data Documentation

elec

double t_mole_local::elec

total charge in molecules

grain_area

double t_mole_local::grain_area

grain_density

double t_mole_local::grain_density

grain_saturation

double t_mole_local::grain_saturation

old_reaction_rks

vector<double> t_mole_local::old_reaction_rks

Referenced by zero().

old_zone

long t_mole_local::old_zone

reaction_rks

vector<double> t_mole_local::reaction_rks

Referenced by chem_heat(), dissoc_rate(), findrate(), findrk(), and zero().

sink

multi_arr<double,2> t_mole_local::sink

Referenced by alloc(), and zero().

source

multi_arr<double,2> t_mole_local::source

these are source and sink terms for the ionization ladder, for chemical processes that remove and add species

Referenced by alloc(), and zero().

species

valarray<class molezone> t_mole_local::species

Referenced by chem_heat(), dissoc_rate(), findrate(), set_ion_locations(), set_isotope_abundances(), sink_rate(), source_rate_tot(), and zero().

xMoleChTrRate

multi_arr<realnum,3> t_mole_local::xMoleChTrRate

Referenced by alloc(), and zero().

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The documentation for this class was generated from the following files:

• mole.h
• mole.cpp
• mole_reactions.cpp
• mole_species.cpp