taulines.cpp File Reference

#include "cddefines.h"
#include "taulines.h"
#include "atmdat.h"

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Functions
void	checkTransitionListOfLists (vector< TransitionList > &list)
TransitionList::iterator	findTrans_byQuantNumb (const string speciesLabel, const long n_hi, const long l_hi, const long S_hi, const long n_lo, const long l_lo, const long S_lo)
TransitionList::iterator	findTrans_byWLAng (string speciesLabel, const t_wavl &wl_Ang, double &wl_err)

Variables
vector< TransitionList >	AllTransitions
bool	lgStatesAdded = false
bool	lgLinesAdded = false
multi_arr< qList, 2 >	StatesElemNEW
char **	chSpecies
vector< species >	dBaseSpecies
vector< qList >	dBaseStates
vector< multi_arr< int, 2 > >	ipdBaseTrans
vector< TransitionList >	dBaseTrans
multi_arr< CollRateCoeffArray, 2 >	AtmolCollRateCoeff
vector< multi_arr< CollSplinesArray, 3 > >	AtmolCollSplines
vector< StoutCollArray >	StoutCollData
long int	nSpecies
qList	AnonStates ("AnonStates", 1)
multi_arr< int, 2 >	ipExtraLymanLinesHeLike
multi_arr< int, 2 >	ipExtraLymanLinesJ05
multi_arr< int, 2 >	ipExtraLymanLinesJ15
vector< TransitionList >	ExtraLymanLinesHeLike
vector< TransitionList >	ExtraLymanLinesJ05
vector< TransitionList >	ExtraLymanLinesJ15
TransitionList	UTALines ("UTALines", &AnonStates)
long int	nLevel1
TransitionList	HFLines ("HFLines", &AnonStates)
vector< vector< TransitionList > >	Transitions
multi_arr< int, 2 >	ipFe2LevN
static qList	Fe2LevNStates
TransitionList	Fe2LevN ("Fe2LevN", &Fe2LevNStates)
multi_arr< int, 3 >	ipSatelliteLines
vector< vector< TransitionList > >	SatelliteLines
TransitionList	TauLine2 ("TauLine2", &AnonStates)
vector< realnum >	cs1_flag_lev2
TransitionProxy::iterator	TauDummy
EmissionProxy	DummyEmis

Function Documentation

checkTransitionListOfLists()

void checkTransitionListOfLists ( vector< TransitionList > & list )

extern

References checkTransitionListOfLists().

Referenced by checkTransitionListOfLists(), and ContCreatePointers().

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findTrans_byQuantNumb()

TransitionList::iterator findTrans_byQuantNumb	(	const string	speciesLabel,
		const long	n_hi,
		const long	l_hi,
		const long	S_hi,
		const long	n_lo,
		const long	l_lo,
		const long	S_lo )

findTrans_byQuantNumb Identify transition of a given species by its quantum numbers.

Parameters

speciesLabel	(in) label of species, e.g., "H 1"
n_hi	(in) principal quantum number of upper level in transition
l_hi	(in) orbital angular momentum of upper level
S_hi	(in) multiplicity of upper level
n_lo	(in) principal quantum number of lower level
l_lo	(in) orbital angular momentum of lower level
S_lo	(in) multiplicity of lower level

Returns

pointer to transition in species list of transitions. If no match is found, return value is past the end of the entire list.

References AllTransitions.

findTrans_byWLAng()

TransitionList::iterator findTrans_byWLAng	(	string	speciesLabel,
		const t_wavl &	wl_Ang,
		double &	wl_err )

findTrans_byWLAng Identify transition of a given species by wavelength.

Parameters

speciesLabel	(in) label of species, e.g., "H 1"
wavelength	(in) transition wavelength, in Angstrom
wl_err	(out) error in wavelength match

Returns

pointer to transition in species list of transitions. If no match is found, return value is past the end of the entire list.

References AllTransitions, and t_wavl::wavlVac().

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Variable Documentation

AllTransitions

vector<TransitionList> AllTransitions

Referenced by ContCreatePointers(), ConvIterCheck(), database_readin(), findTrans_byQuantNumb(), findTrans_byWLAng(), HyperfineCreate(), diatomics::init(), InitSimPostparse(), iso_allocate(), read_level2_lines(), read_UTA_lines(), and RT_line_all_escape().

AnonStates

qList AnonStates("AnonStates", 1)	(	"AnonStates"	,
		1	)

Referenced by iso_allocate().

AtmolCollRateCoeff

multi_arr<CollRateCoeffArray,2> AtmolCollRateCoeff

Referenced by atmdat_LAMDA_readin(), database_readin(), dBaseUpdateCollCoeffs(), and LeidenCollRate().

AtmolCollSplines

vector< multi_arr<CollSplinesArray,3> > AtmolCollSplines

Referenced by atmdat_CHIANTI_readin(), CHIANTI_Upsilon(), and database_readin().

chSpecies

char** chSpecies

Referenced by TransitionProxy::chLabel(), t_mole_local::dissoc_rate(), isMolecule(), isSpecies(), lines_hydro(), t_mean::MeanMoleculeTemp(), t_mole_local::sink_rate_tot(), t_mole_local::source_rate_tot(), and species_gasphase_density().

cs1_flag_lev2

vector<realnum> cs1_flag_lev2

Referenced by CoolDima(), and read_level2_lines().

dBaseSpecies

vector<species> dBaseSpecies

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), CHIANTI_Upsilon(), ContCreatePointers(), ConvIterCheck(), CoolEvaluate(), database_prep(), database_readin(), dBase_solve(), dBaseAbund(), dBaseTrim(), dBaseUpdateCollCoeffs(), ion_photo(), IterStart(), lines(), lines_general(), PresTotCurrent(), PrtLinePres(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), SaveDo(), SaveLineStuff(), states_nelemfill(), states_popfill(), states_propprint(), TempChange(), and trim_levels().

dBaseStates

vector<qList> dBaseStates

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), ContCreatePointers(), database_prep(), database_readin(), dBase_solve(), dBaseAbund(), dBaseTrim(), ion_photo(), states_nelemfill(), states_popfill(), states_propprint(), and trim_levels().

dBaseTrans

vector<TransitionList> dBaseTrans

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), chkCaHeps(), ContCreatePointers(), ConvIterCheck(), CoolSum(), database_prep(), database_readin(), dBase_solve(), dBaseTrim(), dBaseUpdateCollCoeffs(), FindNeg(), FndLineHt(), lines(), PresTotCurrent(), PrtLinePres(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveDo(), SaveLineData(), SaveLineStuff(), states_nelemfill(), and trim_levels().

DummyEmis

EmissionProxy DummyEmis

Todo

2 bring these two together.

AddLine2Stack add generic emission line to GenericLines and return pointer to that state.

Referenced by TransitionProxy::Emis(), and InitDefaultsPreparse().

ExtraLymanLinesHeLike

vector<TransitionList> ExtraLymanLinesHeLike

this is the set of extra lines for He iso-sequence, ExtraLymanLinesHeLike[ipZ][n]

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ExtraLymanLinesJ05

vector<TransitionList> ExtraLymanLinesJ05

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), PrtComment(), prtmet(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ExtraLymanLinesJ15

vector<TransitionList> ExtraLymanLinesJ15

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), PrtComment(), prtmet(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

Fe2LevN

TransitionList Fe2LevN("Fe2LevN", &Fe2LevNStates)	(	"Fe2LevN"	,
		&	Fe2LevNStates )

Fe2LevNStates

qList Fe2LevNStates

static

HFLines

TransitionList HFLines("HFLines", &AnonStates)	(	"HFLines"	,
		&	AnonStates )

Referenced by cdTemp(), cdTemp(), ContCreatePointers(), CoolHyperfine(), FindNeg(), FndLineHt(), H21_cm_pops(), HyperfineCreate(), HyperfineCS(), iter_end_check(), lines(), lines_setup(), PresTotCurrent(), PrtComment(), PrtFinal(), PrtLinePres(), prtmet(), radius_increment(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveDo(), and SaveLineData().

ipdBaseTrans

vector< multi_arr<int,2> > ipdBaseTrans

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), database_readin(), and trim_levels().

ipExtraLymanLinesHeLike

multi_arr<int,2> ipExtraLymanLinesHeLike

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ipExtraLymanLinesJ05

multi_arr<int,2> ipExtraLymanLinesJ05

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ipExtraLymanLinesJ15

multi_arr<int,2> ipExtraLymanLinesJ15

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ipFe2LevN

multi_arr<int,2> ipFe2LevN

ipSatelliteLines

multi_arr<int,3> ipSatelliteLines

lines forming from doubly excited states

Referenced by ContCreatePointers(), DoSatelliteLines(), iso_allocate(), iso_satellite(), iso_satellite_update(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineData().

lgLinesAdded

bool lgLinesAdded = false

Referenced by TransitionProxy::AddLine2Stack(), and ContCreatePointers().

lgStatesAdded

bool lgStatesAdded = false

Referenced by TransitionProxy::AddHiState(), TransitionProxy::AddLoState(), and ContCreatePointers().

nLevel1

long int nLevel1

this is the number of level 1 lines, and is set in atmdat_readin by counter number of data lines in level1.dat

nSpecies

long int nSpecies

Referenced by atmdat_readin(), ContCreatePointers(), ConvIterCheck(), CoolEvaluate(), CoolSum(), database_readin(), dBase_solve(), dBaseTrim(), dBaseUpdateCollCoeffs(), FindNeg(), FndLineHt(), IterStart(), lines(), lines_general(), PresTotCurrent(), PrtLinePres(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveDo(), SaveLineData(), SaveLineStuff(), states_nelemfill(), states_popfill(), states_propprint(), and TempChange().

SatelliteLines

vector<vector<TransitionList> > SatelliteLines

Referenced by ContCreatePointers(), DoSatelliteLines(), iso_allocate(), iso_satellite(), iso_satellite_update(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineData().

StatesElemNEW

multi_arr<qList,2> StatesElemNEW

StoutCollData

vector< StoutCollArray > StoutCollData

Referenced by atmdat_STOUT_readin(), database_readin(), and StoutCollRate().

TauDummy

TransitionProxy::iterator TauDummy

this is a dummy optical depth array for non-existant lines

TauLine2

TransitionList TauLine2("TauLine2", &AnonStates)	(	"TauLine2"	,
		&	AnonStates )

Referenced by ContCreatePointers(), CoolDima(), CoolSum(), FindNeg(), FndLineHt(), lines(), lines_setup(), PresTotCurrent(), PrtComment(), PrtLinePres(), prtmet(), read_level2_lines(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveLineData(), and SaveLineStuff().

Transitions

vector<vector<TransitionList> > Transitions

main line arrays for hydrogenic ions

first dimension is atomic number
second dim is upper level
third dim is lower level
nta dim is set of pointers for quantities within line transfer arrays
in the forc translation, the upper level was too low by 1, since the
fortran was starting at 1. the lower dim was not changed by translation
since it started from ip1s = 0
any place where the third dim has -1 is probably a remnant from forc and is wrong

Referenced by iso_allocate().

UTALines

TransitionList UTALines("UTALines", &AnonStates)	(	"UTALines"	,
		&	AnonStates )

Referenced by ContCreatePointers(), lines(), lines_setup(), prtmet(), read_UTA_lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveLineData(), SaveLineStuff(), and UpdateUTAs().