#include "cddefines.h"
#include "cddrive.h"
#include "struc.h"
#include "colden.h"
#include "radius.h"
#include "stopcalc.h"
#include "hextra.h"
#include "iterations.h"
#include "conv.h"
#include "timesc.h"
#include "dense.h"
#include "mole.h"
#include "thermal.h"
#include "pressure.h"
#include "phycon.h"
#include "wind.h"
#include "iso.h"
#include "dynamics.h"
#include "cosmology.h"
#include "parser.h"
#include "rfield.h"
#include "container_classes.h"
#include "save.h"
#include "trace.h"

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Macros
#define	MERGE 0

Functions
STATIC void	DynaNewStep (void)

STATIC void	DynaSaveLast (void)

STATIC bool	lgNeedTimestep ()

STATIC void	InitDynaTimestep ()

STATIC void	save_DT (double dtime, double this_fact, string &reason)

STATIC double	timestep_next (void)

void	DynaIonize (void)

void	DynaStartZone (void)

void	DynaEndZone (void)

void	DynaIterEnd (void)

realnum	DynaFlux (double depth)

void	DynaCreateArrays ()

STATIC void	advection_set_default (bool lgWind)

void	ParseDynaTime (Parser &p)

void	ParseDynaWind (Parser &p)

void	DynaPrtZone (void)

void	DynaPunchTimeDep (FILE ipPnunit, const char chJob)

void	DynaSave (FILE *ipPnunit, char chJob)

void	DynaIterStart (void)

Variables
static const bool	lgPrintDynamics = false

t_dynamics	dynamics

static int	ipUpstream =-1

static int	iphUpstream =-1

static int	ipyUpstream =-1

static multi_arr< double, 2 >	UpstreamIon

static multi_arr< double, 3 >	UpstreamStatesElem

static vector< double >	UpstreamElem

static vector< double >	Upstream_molecules

static vector< double >	time_elapsed_time

static vector< double >	time_flux_ratio

static vector< double >	time_dt

static vector< double >	time_dt_scale_factor

static bool	lgtime_dt_specified

static vector< int >	lgtime_Recom

static const int	NTIME = 200

static long int	nTime_flux =0

static double	Dyn_dr

static double	AdvecSpecificEnthalpy

static vector< double >	Old_depth

static vector< realnum >	Old_histr

static vector< realnum >	Old_xLyman_depth

static vector< realnum >	Old_hiistr

static vector< realnum >	Old_pressure

static vector< realnum >	Old_density

static vector< realnum >	Old_DenMass

static vector< realnum >	EnthalpyDensity

static vector< realnum >	Old_ednstr

static vector< realnum >	Old_EnthalpyDensity

static multi_arr< realnum, 2 >	Old_molecules

static multi_arr< realnum, 3 >	Old_xIonDense

static multi_arr< realnum, 2 >	Old_gas_phase

static multi_arr< realnum, 4 >	Old_StatesElem

static long int	nOld_zone

Macro Definition Documentation

◆ MERGE

#define MERGE 0

Referenced by t_dynamics::Cool(), and t_dynamics::Heat().

Function Documentation

◆ advection_set_default()

STATIC void advection_set_default ( bool lgWind )

References conv, DEBUG_ENTRY, dynamics, pressure, STATIC, and thermal.

Referenced by InitDynaTimestep(), ParseDynaTime(), and ParseDynaWind().

◆ DynaCreateArrays()

void DynaCreateArrays ( void )

DynaCreateArrays allocate some space needed to save the dynamics structure variables, called from atmdat_readin

References DEBUG_ENTRY, dense, dynamics, EnthalpyDensity, fixit, ipHYDROGEN, iso_sp, LIMELM, mole_global, NISO, Old_DenMass, Old_density, Old_depth, Old_ednstr, Old_EnthalpyDensity, Old_gas_phase, Old_hiistr, Old_histr, Old_molecules, Old_pressure, Old_StatesElem, Old_xIonDense, Old_xLyman_depth, struc, Upstream_molecules, UpstreamElem, UpstreamIon, and UpstreamStatesElem.

Referenced by atmdat_readin().

◆ DynaEndZone()

void DynaEndZone ( void )

DynaEndZone called at end of iteration when advection is turned on

References DEBUG_ENTRY, DynaFlux(), dynamics, fprintf(), ioQQQ, radius, and wind.

Referenced by ZoneEnd().

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◆ DynaFlux()

realnum DynaFlux ( double depth )

References DEBUG_ENTRY, dense, dynamics, and pow().

Referenced by DynaEndZone(), PresTotCurrent(), and stepDensity().

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◆ DynaIonize()

void DynaIonize ( void )

DynaIonize, called from ionize to evaluate advective terms for current conditions

References AdvecSpecificEnthalpy, ASSERT, DEBUG_ENTRY, dense, Dyn_dr, dynamics, EnthalpyDensity, fprintf(), ioQQQ, ipCARBON, ipH_LIKE, ipHYDROGEN, ipUpstream, iso_sp, iteration, LIMELM, mole_global, NISO, nzone, Old_depth, Old_xIonDense, phycon, POW2, pressure, radius, scalingDensity(), struc, thermal, Upstream_molecules, UpstreamElem, UpstreamIon, UpstreamStatesElem, and wind.

Referenced by ConvBase().

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◆ DynaIterEnd()

void DynaIterEnd ( void )

routine called at end of iteration when advection is turned on

References ASSERT, cosmology, DEBUG_ENTRY, Dyn_dr, dynamics, DynaNewStep(), DynaSaveLast(), fprintf(), GetHubbleFactor(), InitDynaTimestep(), ioQQQ, iphUpstream, ipUpstream, ipyUpstream, iteration, iterations, lgNeedTimestep(), lgPrintDynamics, lgtime_dt_specified, lgtime_Recom, nTime_flux, phycon, pressure, radius, rfield, scalingDensity(), StopCalc, thermal, time_dt, time_dt_scale_factor, time_elapsed_time, timestep_next(), and wind.

Referenced by IterRestart().

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◆ DynaIterStart()

void DynaIterStart ( void )

routine called at start of iteration when advection is turned on

References cdEXIT, DEBUG_ENTRY, dynamics, EXIT_FAILURE, fprintf(), hextra, ioQQQ, iteration, lgPrintDynamics, linint(), nTime_flux, rfield, time_elapsed_time, and time_flux_ratio.

Referenced by IterStart().

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◆ DynaNewStep()

STATIC void DynaNewStep ( void )

References ASSERT, BIGFLOAT, DEBUG_ENTRY, dense, Dyn_dr, dynamics, fprintf(), ioQQQ, ipH_LIKE, ipHYDROGEN, iso_sp, LIMELM, mole_global, NISO, nOld_zone, nzone, Old_density, Old_depth, Old_molecules, Old_StatesElem, Old_xIonDense, POW2, scalingZoneDensity(), SMALLFLOAT, STATIC, and struc.

Referenced by DynaIterEnd().

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◆ DynaPrtZone()

void DynaPrtZone ( void )

DynaPrtZone - called to print zone results

References AdvecSpecificEnthalpy, ASSERT, DEBUG_ENTRY, dense, dynamics, EnthalpyDensity, fprintf(), ioQQQ, nzone, phycon, POW2, pressure, scalingDensity(), struc, thermal, timesc, and wind.

Referenced by PrtZone().

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◆ DynaPunchTimeDep()

void DynaPunchTimeDep	(	FILE *	ipPnunit,
		const char *	chJob )

DynaPunchTimeDep - save info about time dependent solution

Parameters

ipPnunit
*chJob

References cdIonFrac(), cdTemp(), colden, column(), cosmology, DEBUG_ENTRY, dense, dynamics, findspecieslocal(), fprintf(), ipCOL_HTOT, ipHYDROGEN, rfield, scalingDensity(), SDIV(), and TotalInsanity().

Referenced by SaveDo().

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◆ DynaSave()

void DynaSave	(	FILE *	ipPnunit,
		char	chJob )

DynaSave save info related to advection

Parameters

ipPnunit
chJob

References AdvecSpecificEnthalpy, DEBUG_ENTRY, dynamics, fprintf(), ipHYDROGEN, phycon, radius, scalingDensity(), thermal, and TotalInsanity().

Referenced by SaveDo().

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◆ DynaSaveLast()

STATIC void DynaSaveLast ( void )

References ASSERT, DEBUG_ENTRY, dense, dynamics, EnthalpyDensity, ipH_LIKE, ipHYDROGEN, isnan, iso_sp, LIMELM, mole_global, NISO, nOld_zone, nzone, Old_DenMass, Old_density, Old_depth, Old_ednstr, Old_EnthalpyDensity, Old_gas_phase, Old_hiistr, Old_histr, Old_molecules, Old_pressure, Old_StatesElem, Old_xIonDense, Old_xLyman_depth, scalingZoneDensity(), STATIC, and struc.

Referenced by DynaIterEnd().

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◆ DynaStartZone()

void DynaStartZone ( void )

DynaStartZone called at start of iteration when advection is turned on

References AdvecSpecificEnthalpy, ASSERT, BIGFLOAT, DEBUG_ENTRY, dense, Dyn_dr, dynamics, fp_bound(), fprintf(), ioQQQ, ipH_LIKE, iphUpstream, ipHYDROGEN, ipUpstream, ipyUpstream, isnan, iso_sp, iteration, LIMELM, MAX2, MIN2, mole, mole_global, NISO, nOld_zone, NULL, nzone, Old_density, Old_depth, Old_EnthalpyDensity, Old_molecules, Old_StatesElem, Old_xIonDense, POW2, radius, scalingDensity(), SMALLFLOAT, Upstream_molecules, UpstreamElem, UpstreamIon, and UpstreamStatesElem.

Referenced by ZoneStart().

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◆ InitDynaTimestep()

STATIC void InitDynaTimestep ( )

References advection_set_default(), DEBUG_ENTRY, dynamics, STATIC, timesc, and wind.

Referenced by DynaIterEnd().

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◆ lgNeedTimestep()

STATIC bool lgNeedTimestep ( )

References DEBUG_ENTRY, dynamics, and STATIC.

Referenced by DynaIterEnd().

◆ ParseDynaTime()

void ParseDynaTime ( Parser & p )

ParseDynaTime parse the time command, called from ParseCommands, in dynamics.c

Parameters

*chCard

References advection_set_default(), ASSERT, cdEXIT, DEBUG_ENTRY, dynamics, EXIT_FAILURE, fprintf(), Parser::getline(), Parser::getNumberCheckAlwaysLog(), Parser::getNumberCheckAlwaysLogLim(), Parser::getNumberDefaultAlwaysLog(), Parser::hasCommand(), ioQQQ, lgPrintDynamics, lgtime_dt_specified, lgtime_Recom, Parser::m_lgEOF, Parser::nMatch(), NTIME, nTime_flux, time_dt, time_dt_scale_factor, time_elapsed_time, time_flux_ratio, and wind.

Referenced by ParseCommands().

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◆ ParseDynaWind()

void ParseDynaWind ( Parser & p )

Todo: 2 Need to include divergence terms in pressure balance if flux index is != 0

Todo: 2 Need to include divergence terms in pressure balance if flux index is != 0

References advection_set_default(), BIGDOUBLE, cdEXIT, DEBUG_ENTRY, dense, dynamics, EXIT_FAILURE, fprintf(), Parser::getNumberCheck(), Parser::getNumberDefault(), Parser::getNumberPlain(), ioQQQ, Parser::nMatch(), pow(), pressure, and wind.

Referenced by ParseCommands().

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◆ save_DT()

STATIC void save_DT	(	double	dtime,
		double	this_fact,
		string &	reason )

References cdTemp(), dynamics, fprintf(), iteration, iterations, save, STATIC, TotalInsanity(), and trace.

Referenced by timestep_next().

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◆ timestep_next()

STATIC double timestep_next ( void )

References cdTemp(), DEBUG_ENTRY, dynamics, fprintf(), ioQQQ, lgPrintDynamics, save_DT(), SDIV(), STATIC, and TotalInsanity().

Referenced by DynaIterEnd().

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Variable Documentation

◆ AdvecSpecificEnthalpy

double AdvecSpecificEnthalpy

static

Referenced by DynaIonize(), DynaPrtZone(), DynaSave(), DynaStartZone(), and t_dynamics::zero().

◆ Dyn_dr

double Dyn_dr

static

Referenced by DynaIonize(), DynaIterEnd(), DynaNewStep(), and DynaStartZone().

◆ dynamics

t_dynamics dynamics

Referenced by AbundChange(), advection_set_default(), check_grid_file(), cloudy(), ConserveEnergy(), ConvBase(), ConvInitSolution(), ConvIterCheck(), CoolEvaluate(), CoolSave(), DynaCreateArrays(), DynaEndZone(), DynaFlux(), DynaIonize(), DynaIterEnd(), DynaIterStart(), DynaNewStep(), DynaPrtZone(), DynaPunchTimeDep(), DynaSave(), DynaSaveLast(), DynaStartZone(), funjac(), HomogeneousSource(), InitDefaultsPreparse(), InitDynaTimestep(), ion_trim2(), iso_level(), IterEnd(), IterRestart(), IterStart(), lgNeedTimestep(), lines_general(), matchGeneric(), mole_eval_dynamic_balance(), Atom_LevelN::operator()(), ParseCoronal(), ParseDont(), ParseDynaTime(), ParseDynaWind(), ParseSet(), pressureZone(), PresTotCurrent(), PrintRates(), PrintSpectrum(), PrtComment(), PrtZone(), radius_first(), radius_increment(), radius_next(), save_DT(), SaveDo(), SaveHeat(), PresMode::set(), stepDensity(), timestep_next(), ZoneEnd(), and ZoneStart().

◆ EnthalpyDensity

vector<realnum> EnthalpyDensity

static

Referenced by DynaCreateArrays(), DynaIonize(), DynaPrtZone(), and DynaSaveLast().

◆ iphUpstream

int iphUpstream =-1

static

Referenced by DynaIterEnd(), and DynaStartZone().

◆ ipUpstream

int ipUpstream =-1

static

Referenced by DynaIonize(), DynaIterEnd(), and DynaStartZone().

◆ ipyUpstream

int ipyUpstream =-1

static

Referenced by DynaIterEnd(), and DynaStartZone().

◆ lgPrintDynamics

const bool lgPrintDynamics = false

static

Referenced by DynaIterEnd(), DynaIterStart(), ParseDynaTime(), and timestep_next().

◆ lgtime_dt_specified

bool lgtime_dt_specified

static

Referenced by DynaIterEnd(), and ParseDynaTime().

◆ lgtime_Recom

vector<int> lgtime_Recom

static

Referenced by DynaIterEnd(), and ParseDynaTime().

◆ nOld_zone

long int nOld_zone

static

Referenced by DynaNewStep(), DynaSaveLast(), DynaStartZone(), and t_dynamics::zero().

◆ NTIME

const int NTIME = 200

static

Referenced by ParseDynaTime().

◆ nTime_flux

long int nTime_flux =0

static

Referenced by DynaIterEnd(), DynaIterStart(), and ParseDynaTime().

◆ Old_DenMass

vector<realnum> Old_DenMass

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

◆ Old_density

vector<realnum> Old_density

static

Referenced by DynaCreateArrays(), DynaNewStep(), DynaSaveLast(), and DynaStartZone().

◆ Old_depth

vector<double> Old_depth

static

Referenced by DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaSaveLast(), and DynaStartZone().

◆ Old_ednstr

vector<realnum> Old_ednstr

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

◆ Old_EnthalpyDensity

vector<realnum> Old_EnthalpyDensity

static

Referenced by DynaCreateArrays(), DynaSaveLast(), and DynaStartZone().

◆ Old_gas_phase

multi_arr<realnum,2> Old_gas_phase

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

◆ Old_hiistr

vector<realnum> Old_hiistr

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

◆ Old_histr

vector<realnum> Old_histr

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

◆ Old_molecules

multi_arr<realnum,2> Old_molecules

static

Referenced by DynaCreateArrays(), DynaNewStep(), DynaSaveLast(), and DynaStartZone().

◆ Old_pressure

vector<realnum> Old_pressure

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

◆ Old_StatesElem

multi_arr<realnum,4> Old_StatesElem

static

Referenced by DynaCreateArrays(), DynaNewStep(), DynaSaveLast(), and DynaStartZone().

◆ Old_xIonDense

multi_arr<realnum,3> Old_xIonDense

static

Referenced by DynaCreateArrays(), DynaIonize(), DynaNewStep(), DynaSaveLast(), and DynaStartZone().

◆ Old_xLyman_depth

vector<realnum> Old_xLyman_depth

static

Referenced by DynaCreateArrays(), and DynaSaveLast().

◆ time_dt

vector<double> time_dt

static

Referenced by DynaIterEnd(), and ParseDynaTime().

◆ time_dt_scale_factor

vector<double> time_dt_scale_factor

static

Referenced by DynaIterEnd(), and ParseDynaTime().

◆ time_elapsed_time

vector<double> time_elapsed_time

static

Referenced by DynaIterEnd(), DynaIterStart(), and ParseDynaTime().

◆ time_flux_ratio

vector<double> time_flux_ratio

static

Referenced by DynaIterStart(), and ParseDynaTime().

◆ Upstream_molecules

vector<double> Upstream_molecules

static

Referenced by DynaCreateArrays(), DynaIonize(), and DynaStartZone().

◆ UpstreamElem

vector<double> UpstreamElem

static

Referenced by DynaCreateArrays(), DynaIonize(), and DynaStartZone().

◆ UpstreamIon

multi_arr<double,2> UpstreamIon

static

Referenced by DynaCreateArrays(), DynaIonize(), and DynaStartZone().

◆ UpstreamStatesElem

multi_arr<double,3> UpstreamStatesElem

static

Referenced by DynaCreateArrays(), DynaIonize(), and DynaStartZone().

Macros

Functions

Variables

Macro Definition Documentation

◆ MERGE

Function Documentation

◆ advection_set_default()

◆ DynaCreateArrays()

◆ DynaEndZone()

◆ DynaFlux()

◆ DynaIonize()

◆ DynaIterEnd()

◆ DynaIterStart()

◆ DynaNewStep()

◆ DynaPrtZone()

◆ DynaPunchTimeDep()

◆ DynaSave()

◆ DynaSaveLast()

◆ DynaStartZone()

◆ InitDynaTimestep()

◆ lgNeedTimestep()

◆ ParseDynaTime()

◆ ParseDynaWind()

◆ save_DT()

◆ timestep_next()

Variable Documentation

◆ AdvecSpecificEnthalpy

◆ Dyn_dr

◆ dynamics

◆ EnthalpyDensity

◆ iphUpstream

◆ ipUpstream

◆ ipyUpstream

◆ lgPrintDynamics

◆ lgtime_dt_specified

◆ lgtime_Recom

◆ nOld_zone

◆ NTIME

◆ nTime_flux

◆ Old_DenMass

◆ Old_density

◆ Old_depth

◆ Old_ednstr

◆ Old_EnthalpyDensity

◆ Old_gas_phase

◆ Old_hiistr

◆ Old_histr

◆ Old_molecules

◆ Old_pressure

◆ Old_StatesElem

◆ Old_xIonDense

◆ Old_xLyman_depth

◆ time_dt

◆ time_dt_scale_factor

◆ time_elapsed_time

◆ time_flux_ratio

◆ Upstream_molecules

◆ UpstreamElem

◆ UpstreamIon

◆ UpstreamStatesElem