#include "transition.h"
#include "species.h"
#include "container_classes.h"

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Functions
void	database_readin (void)

void	dBaseTrim ()

void	dBaseUpdateCollCoeffs (void)

void	dBase_solve (void)

void	checkTransitionListOfLists (vector< TransitionList > &)

TransitionList::iterator	findTrans_byQuantNumb (const string speciesLabel, const long n_hi, const long l_hi, const long S_hi, const long n_lo, const long l_lo, const long S_lo)

TransitionList::iterator	findTrans_byWLAng (string speciesLabel, const double wl_Ang, double &wl_err)

Variables
bool	lgStatesAdded

bool	lgLinesAdded

qList	AnonStates

char **	chSpecies

vector< species >	dBaseSpecies

vector< qList >	dBaseStates

vector< multi_arr< int, 2 > >	ipdBaseTrans

vector< TransitionList >	dBaseTrans

multi_arr< CollRateCoeffArray, 2 >	AtmolCollRateCoeff

vector< multi_arr < CollSplinesArray, 3 > >	AtmolCollSplines

vector< StoutCollArray >	StoutCollData

long int	nSpecies

TransitionProxy::iterator	TauDummy

multi_arr< int, 3 >	ipExtraLymanLines

vector< vector< TransitionList > >	ExtraLymanLines

TransitionList	UTALines

long int	nLevel1

TransitionList	HFLines

vector< vector< TransitionList > >	Transitions

vector< TransitionList >	AllTransitions

multi_arr< int, 2 >	ipFe2LevN

TransitionList	Fe2LevN

multi_arr< int, 3 >	ipSatelliteLines

vector< vector< TransitionList > >	SatelliteLines

bool	lgHydroAlloc

const int	NWINDDIM = 6744

long	nWindLine

TransitionList	TauLine2

vector< realnum >	cs1_flag_lev2

Function Documentation

void checkTransitionListOfLists ( vector< TransitionList > & )

Referenced by ContCreatePointers().

void database_readin ( void )

References AllTransitions, ASSERT, atmdat, atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), AtmolCollRateCoeff, AtmolCollSplines, CHARS_SPECIES, t_atmdat::chCloudyChiantiFile, t_atmdat::chdBaseSources, t_cpu_i::chDirSeparator(), DataParser::checkEOL(), DataParser::checkMagic(), t_elementnames::chElementSym, t_atmdat::chLamdaFile, t_atmdat::chStoutFile, t_atmdat::chVersion, cpu, database_prep(), db_basename_to_spectral(), dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, DEBUGSTATE, elementnames, DataParser::errorAbort(), ES_NONE, findspecies(), fixit, fprintf(), DataParser::getline(), DataParser::getToken(), DataParser::getTokenOptional(), t_cpu::i(), Singleton< t_version >::Inst(), ioQQQ, ipdBaseTrans, ipNCOLLIDER, t_save::ipSDSFile, t_atmdat::lgCalpgmOn, t_atmdat::lgChiantiOn, t_atmdat::lgdBaseSourceExists, t_atmdat::lgLamdaOn, t_prt::lgPrintTime, t_save::lgSDSOn, t_atmdat::lgStoutOn, LIMELM, notein(), nSpecies, null_mole, DataParser::open(), prt, save, set_fractionation(), speciesCheck(), states_nelemfill(), states_popfill(), states_propprint(), StoutCollData, TotalInsanity(), trim_levels(), and trimTrailingWhiteSpace().

Referenced by atmdat_readin().

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void dBase_solve ( void )

References abund, multi_arr< T, d, ALLOC, lgBC >::alloc(), ASSERT, atmdat, atoms, cdEXIT, colliders, CollisionZero(), ContNegative(), conv, CoolAdd(), t_oxy::d5007r, t_atoms::d5200r, t_oxy::d6300, dBaseAbund(), dBaseSpecies, dBaseStates, dBaseTrans, t_thermal::dCooldT, DEBUG_ENTRY, depart(), t_hydro::dstfe2lya, DumpLine(), t_thermal::elementcool, TransitionProxy::Emis(), EmLineZero(), energy(), TransitionProxy::EnergyWN(), t_ionbal::ExcitationGround, EXIT_FAILURE, fp_equal(), fprintf(), EmissionProxy::gf(), hydro, ionbal, ioQQQ, ipELECTRON, ipH1s, ipH2p, ipH_LIKE, ipHYDROGEN, ipIRON, t_atmdat::ipSpecIon, iso_sp, LEVEL_ACTIVE, LEVEL_INACTIVE, t_conv::lgSearch, LIMELM, max(), MAX2, MIN2, nSpecies, NULL, nzone, oxy, phycon, avx_ptr< T, lgBC >::ptr0(), t_atoms::rateMg2, secondaries, set_xIntensity(), t_thermal::setHeating(), setXtraRatesCa2(), setXtraRatesFe2(), setXtraRatesO1(), ShowMe(), SMALLFLOAT, t_phycon::sqrte, t_iso_sp::st, t_phycon::te, thermal, TotalInsanity(), t_iso_sp::trans(), vexp(), vzero(), t_secondaries::x12tot, and multi_arr< T, d, ALLOC, lgBC >::zero().

Referenced by CoolEvaluate().

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void dBaseTrim ( )

References abund, conv, dBaseAbund(), dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, dense, nSpecies, t_conv::nTotalIoniz, and t_dense::xNucleiTotal.

Referenced by CoolEvaluate().

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void dBaseUpdateCollCoeffs ( void )

References atmdat, AtmolCollRateCoeff, ChiantiCollRate(), CollisionProxy::col_str(), t_atmdat::collstrDefault, dBaseSpecies, dBaseTrans, DEBUG_ENTRY, ipATOM_H, ipATOM_HE, ipELECTRON, ipH2, ipH2_ORTHO, ipH2_PARA, ipHE_PLUS, ipNCOLLIDER, ipPROTON, LeidenCollRate(), t_atmdat::lgGbarOn, MakeCS(), nSpecies, phycon, CollisionProxy::rate_coef_ul(), CollisionProxy::rate_coef_ul_set(), t_phycon::sqrte, StoutCollRate(), t_phycon::te, and TotalInsanity().

Referenced by CoolEvaluate().

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TransitionList::iterator findTrans_byQuantNumb	(	const string	speciesLabel,
		const long	n_hi,
		const long	l_hi,
		const long	S_hi,
		const long	n_lo,
		const long	l_lo,
		const long	S_lo
	)

findTrans_byQuantNumb Identify transition of a given species by its quantum numbers.

Parameters

speciesLabel	(in) label of species, e.g., "H 1"
n_hi	(in) principal quantum number of upper level in transition
l_hi	(in) orbital angular momentum of upper level
S_hi	(in) multiplicity of upper level
n_lo	(in) principal quantum number of lower level
l_lo	(in) orbital angular momentum of lower level
S_lo	(in) multiplicity of lower level

Returns: pointer to transition in species list of transitions. If no match is found, return value is past the end of the entire list.

References AllTransitions.

TransitionList::iterator findTrans_byWLAng	(	string	speciesLabel,
		const double	wl_Ang,
		double &	wl_err
	)

findTrans_byWLAng Identify transition of a given species by wavelength.

Parameters

speciesLabel	(in) label of species, e.g., "H 1"
wavelength	(in) transition wavelength, in Angstrom
wl_err	(out) error in wavelength match

Returns: pointer to transition in species list of transitions. If no match is found, return value is past the end of the entire list.

References AllTransitions.

Variable Documentation

vector<TransitionList> AllTransitions

Referenced by ContCreatePointers(), ConvIterCheck(), database_readin(), findTrans_byQuantNumb(), findTrans_byWLAng(), HyperfineCreate(), diatomics::init(), InitSimPostparse(), iso_allocate(), read_level2_lines(), read_UTA_lines(), and RT_line_all_escape().

qList AnonStates

Referenced by iso_allocate().

multi_arr<CollRateCoeffArray,2> AtmolCollRateCoeff

Referenced by atmdat_LAMDA_readin(), database_readin(), dBaseUpdateCollCoeffs(), and LeidenCollRate().

vector< multi_arr<CollSplinesArray,3> > AtmolCollSplines

Referenced by atmdat_CHIANTI_readin(), CHIANTI_Upsilon(), and database_readin().

char** chSpecies

Referenced by TransitionProxy::chLabel().

vector<realnum> cs1_flag_lev2

Referenced by CoolDima(), and read_level2_lines().

vector<qList> dBaseStates

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), ContCreatePointers(), database_prep(), database_readin(), dBase_solve(), dBaseAbund(), dBaseTrim(), ion_photo(), states_nelemfill(), states_popfill(), states_propprint(), and trim_levels().

vector<vector<TransitionList> > ExtraLymanLines

Referenced by ContCreatePointers(), iso_allocate(), iso_create(), lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

TransitionList Fe2LevN

TransitionList HFLines

extern transition TauLines[NTAULINES+1]; these are the public parts of the hyperfine structure line transfer info data gathered from hyperfine.dat using routines in hyperfine.c the structure containing the hfs line information

Referenced by cdTemp(), ContCreatePointers(), CoolHyperfine(), FindNeg(), FndLineHt(), H21_cm_pops(), HyperfineCreate(), HyperfineCS(), iter_end_check(), lines(), lines_setup(), PresTotCurrent(), PrtComment(), PrtFinal(), PrtLinePres(), prtmet(), radius_increment(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveDo(), and SaveLineData().

vector< multi_arr<int,2> > ipdBaseTrans

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), database_readin(), and trim_levels().

multi_arr<int,3> ipExtraLymanLines

this is the set of extra lines, ExtraLymanLines[ipISO][ipZ][n]

Referenced by ContCreatePointers(), iso_allocate(), iso_create(), lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

multi_arr<int,2> ipFe2LevN

multi_arr<int,3> ipSatelliteLines

lines forming from doubly excited states

Referenced by ContCreatePointers(), DoSatelliteLines(), iso_allocate(), iso_satellite(), iso_satellite_update(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineData().

bool lgHydroAlloc

this will be set true once space is allocated for the HydroLines array. from then on any HYDROGENIC LEVELS command will be ignored, this is set to false in cddefines.c

Referenced by iso_create(), and ParseDatabaseISO().

bool lgLinesAdded

Referenced by TransitionProxy::AddLine2Stack(), and ContCreatePointers().

bool lgStatesAdded

Referenced by TransitionProxy::AddHiState(), TransitionProxy::AddLoState(), and ContCreatePointers().

long int nLevel1

this is the number of level 1 lines, and is set in atmdat_readin by counter number of data lines in level1.dat

const int NWINDDIM = 6744

number of level 2 lines, dim for WindLine array

long nWindLine

this is set to 0 with no atom_level2 command, normally equal to NWINDDIM, definition is in cddefines.c

Referenced by atmdat_readin(), ContCreatePointers(), CoolDima(), CoolSum(), FindNeg(), FndLineHt(), lines(), lines_setup(), ParseDont(), PresTotCurrent(), PrtColumns(), PrtComment(), PrtLinePres(), prtmet(), read_level2_lines(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveLineData(), and SaveLineStuff().

vector<vector<TransitionList> > SatelliteLines

Referenced by ContCreatePointers(), DoSatelliteLines(), iso_allocate(), iso_satellite(), iso_satellite_update(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineData().

vector< StoutCollArray > StoutCollData

Referenced by atmdat_STOUT_readin(), database_readin(), and StoutCollRate().

TransitionProxy::iterator TauDummy

this is a dummy optical depth array for non-existant lines

TransitionList TauLine2

pointers to element and ion, TauLine2[line number][pointer within vector]

Referenced by ContCreatePointers(), CoolDima(), CoolSum(), FindNeg(), FndLineHt(), lines(), lines_setup(), PresTotCurrent(), PrtComment(), PrtLinePres(), prtmet(), read_level2_lines(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveLineData(), and SaveLineStuff().

vector<vector<TransitionList> > Transitions

main line arrays for hydrogenic ions<br>

first dimension is atomic number
second dim is upper level
third dim is lower level
nta dim is set of pointers for quantities within line transfer arrays
in the forc translation, the upper level was too low by 1, since the
fortran was starting at 1. the lower dim was not changed by translation
since it started from ip1s = 0
any place where the third dim has -1 is probably a remnant from forc and is wrong

Referenced by iso_allocate().

TransitionList UTALines

the set of inner shell lines

Referenced by ContCreatePointers(), lines(), lines_setup(), prtmet(), read_UTA_lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveLineData(), SaveLineStuff(), and UpdateUTAs().

Functions

Variables

Function Documentation

Variable Documentation