taulines.h File Reference

#include "transition.h"
#include "species.h"
#include "container_classes.h"

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Functions
void	database_readin (void)
void	dBaseTrim ()
void	dBaseUpdateCollCoeffs (void)
void	dBase_solve (void)
void	checkTransitionListOfLists (vector< TransitionList > &)
TransitionList::iterator	findTrans_byQuantNumb (const string speciesLabel, const long n_hi, const long l_hi, const long S_hi, const long n_lo, const long l_lo, const long S_lo)
TransitionList::iterator	findTrans_byWLAng (string speciesLabel, const t_wavl &wl_Ang, double &wl_err)

Variables
bool	lgStatesAdded
bool	lgLinesAdded
qList	AnonStates
char **	chSpecies
vector< species >	dBaseSpecies
vector< qList >	dBaseStates
vector< multi_arr< int, 2 > >	ipdBaseTrans
vector< TransitionList >	dBaseTrans
multi_arr< CollRateCoeffArray, 2 >	AtmolCollRateCoeff
vector< multi_arr< CollSplinesArray, 3 > >	AtmolCollSplines
vector< StoutCollArray >	StoutCollData
long int	nSpecies
TransitionProxy::iterator	TauDummy
multi_arr< int, 2 >	ipExtraLymanLinesHeLike
multi_arr< int, 2 >	ipExtraLymanLinesJ05
multi_arr< int, 2 >	ipExtraLymanLinesJ15
vector< TransitionList >	ExtraLymanLinesHeLike
vector< TransitionList >	ExtraLymanLinesJ05
vector< TransitionList >	ExtraLymanLinesJ15
TransitionList	UTALines
long int	nLevel1
TransitionList	HFLines
vector< vector< TransitionList > >	Transitions
vector< TransitionList >	AllTransitions
multi_arr< int, 2 >	ipFe2LevN
TransitionList	Fe2LevN
multi_arr< int, 3 >	ipSatelliteLines
vector< vector< TransitionList > >	SatelliteLines
bool	lgHydroAlloc
const int	NWINDDIM = 6744
long	nWindLine
TransitionList	TauLine2
vector< realnum >	cs1_flag_lev2

Function Documentation

checkTransitionListOfLists()

void checkTransitionListOfLists ( vector< TransitionList > & list )

extern

References checkTransitionListOfLists().

Referenced by checkTransitionListOfLists(), and ContCreatePointers().

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database_readin()

void database_readin

(

void

)

References AllTransitions, ASSERT, atmdat, atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), AtmolCollRateCoeff, AtmolCollSplines, CHARS_SPECIES, DataParser::checkEOL(), DataParser::checkMagic(), cpu, database_prep(), db_basename_to_spectral(), dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, DEBUGSTATE, elementnames, DataParser::errorAbort(), ES_NONE, findspecies(), fixit, fprintf(), DataParser::getline(), DataParser::getToken(), DataParser::getTokenOptional(), Singleton< t_version >::Inst(), ioQQQ, ipdBaseTrans, ipNCOLLIDER, LIMELM, notein(), nSpecies, null_mole, DataParser::open(), prt, save, set_fractionation(), speciesCheck(), states_nelemfill(), states_popfill(), states_propprint(), StoutCollData, TotalInsanity(), trim_levels(), and trimTrailingWhiteSpace().

Referenced by atmdat_readin().

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dBase_solve()

void dBase_solve

(

void

)

References abund, multi_arr< T, d, ALLOC, lgBC >::alloc(), ASSERT, atmdat, atoms, cdEXIT, colliders, CollisionZero(), ContNegative(), conv, CoolAdd(), dBaseAbund(), dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, depart(), DumpLine(), EmLineZero(), energy(), EXIT_FAILURE, fp_equal(), fprintf(), hydro, ionbal, ioQQQ, ipELECTRON, ipH1s, ipH2p, ipH_LIKE, ipHYDROGEN, ipIRON, iso_sp, LEVEL_ACTIVE, LEVEL_INACTIVE, LIMELM, max(), MAX2, MIN2, nSpecies, NULL, nzone, oxy, phycon, avx_ptr< T, lgBC >::ptr0(), secondaries, set_xIntensity(), setXtraRatesCa2(), setXtraRatesFe2(), setXtraRatesO1(), ShowMe(), SMALLFLOAT, thermal, TotalInsanity(), vexp(), vzero(), and multi_arr< T, d, ALLOC, lgBC >::zero().

Referenced by CoolEvaluate().

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dBaseTrim()

void dBaseTrim

(

)

References abund, conv, dBaseAbund(), dBaseSpecies, dBaseStates, dBaseTrans, DEBUG_ENTRY, dense, and nSpecies.

Referenced by CoolEvaluate().

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dBaseUpdateCollCoeffs()

void dBaseUpdateCollCoeffs

(

void

)

References atmdat, AtmolCollRateCoeff, ChiantiCollRate(), CollisionProxy::col_str(), dBaseSpecies, dBaseTrans, DEBUG_ENTRY, ipATOM_H, ipATOM_HE, ipELECTRON, ipH2, ipH2_ORTHO, ipH2_PARA, ipHE_PLUS, ipNCOLLIDER, ipPROTON, LeidenCollRate(), MakeCS(), nSpecies, phycon, CollisionProxy::rate_coef_ul(), CollisionProxy::rate_coef_ul_set(), StoutCollRate(), and TotalInsanity().

Referenced by CoolEvaluate().

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findTrans_byQuantNumb()

TransitionList::iterator findTrans_byQuantNumb	(	const string	speciesLabel,
		const long	n_hi,
		const long	l_hi,
		const long	S_hi,
		const long	n_lo,
		const long	l_lo,
		const long	S_lo )

findTrans_byQuantNumb Identify transition of a given species by its quantum numbers.

Parameters

speciesLabel	(in) label of species, e.g., "H 1"
n_hi	(in) principal quantum number of upper level in transition
l_hi	(in) orbital angular momentum of upper level
S_hi	(in) multiplicity of upper level
n_lo	(in) principal quantum number of lower level
l_lo	(in) orbital angular momentum of lower level
S_lo	(in) multiplicity of lower level

Returns

pointer to transition in species list of transitions. If no match is found, return value is past the end of the entire list.

References AllTransitions.

findTrans_byWLAng()

TransitionList::iterator findTrans_byWLAng	(	string	speciesLabel,
		const t_wavl &	wl_Ang,
		double &	wl_err )

findTrans_byWLAng Identify transition of a given species by wavelength.

Parameters

speciesLabel	(in) label of species, e.g., "H 1"
wavelength	(in) transition wavelength, in Angstrom
wl_err	(out) error in wavelength match

Returns

pointer to transition in species list of transitions. If no match is found, return value is past the end of the entire list.

References AllTransitions, and t_wavl::wavlVac().

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Variable Documentation

AllTransitions

vector<TransitionList> AllTransitions

extern

Referenced by ContCreatePointers(), ConvIterCheck(), database_readin(), findTrans_byQuantNumb(), findTrans_byWLAng(), HyperfineCreate(), diatomics::init(), InitSimPostparse(), iso_allocate(), read_level2_lines(), read_UTA_lines(), and RT_line_all_escape().

AnonStates

qList AnonStates

extern

AtmolCollRateCoeff

multi_arr<CollRateCoeffArray,2> AtmolCollRateCoeff

extern

Referenced by atmdat_LAMDA_readin(), database_readin(), dBaseUpdateCollCoeffs(), and LeidenCollRate().

AtmolCollSplines

vector< multi_arr<CollSplinesArray,3> > AtmolCollSplines

extern

Referenced by atmdat_CHIANTI_readin(), CHIANTI_Upsilon(), and database_readin().

chSpecies

char** chSpecies

extern

Referenced by TransitionProxy::chLabel(), t_mole_local::dissoc_rate(), isMolecule(), isSpecies(), lines_hydro(), t_mean::MeanMoleculeTemp(), t_mole_local::sink_rate_tot(), t_mole_local::source_rate_tot(), and species_gasphase_density().

cs1_flag_lev2

vector<realnum> cs1_flag_lev2

extern

Referenced by CoolDima(), and read_level2_lines().

dBaseSpecies

vector<species> dBaseSpecies

extern

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), CHIANTI_Upsilon(), ContCreatePointers(), ConvIterCheck(), CoolEvaluate(), database_prep(), database_readin(), dBase_solve(), dBaseAbund(), dBaseTrim(), dBaseUpdateCollCoeffs(), ion_photo(), IterStart(), lines(), lines_general(), PresTotCurrent(), PrtLinePres(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), SaveDo(), SaveLineStuff(), states_nelemfill(), states_popfill(), states_propprint(), TempChange(), and trim_levels().

dBaseStates

vector<qList> dBaseStates

extern

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), ContCreatePointers(), database_prep(), database_readin(), dBase_solve(), dBaseAbund(), dBaseTrim(), ion_photo(), states_nelemfill(), states_popfill(), states_propprint(), and trim_levels().

dBaseTrans

vector<TransitionList> dBaseTrans

extern

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), chkCaHeps(), ContCreatePointers(), ConvIterCheck(), CoolSum(), database_prep(), database_readin(), dBase_solve(), dBaseTrim(), dBaseUpdateCollCoeffs(), FindNeg(), FndLineHt(), lines(), PresTotCurrent(), PrtLinePres(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveDo(), SaveLineData(), SaveLineStuff(), states_nelemfill(), and trim_levels().

ExtraLymanLinesHeLike

vector<TransitionList> ExtraLymanLinesHeLike

extern

this is the set of extra lines for He iso-sequence, ExtraLymanLinesHeLike[ipZ][n]

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ExtraLymanLinesJ05

vector<TransitionList> ExtraLymanLinesJ05

extern

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), PrtComment(), prtmet(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ExtraLymanLinesJ15

vector<TransitionList> ExtraLymanLinesJ15

extern

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), PrtComment(), prtmet(), RT_DestProb(), RT_diffuse(), RT_line_all(), RT_line_all_escape(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

Fe2LevN

TransitionList Fe2LevN

extern

HFLines

TransitionList HFLines

extern

extern transition TauLines[NTAULINES+1]; these are the public parts of the hyperfine structure line transfer info data gathered from hyperfine.dat using routines in hyperfine.c the structure containing the hfs line information

ipdBaseTrans

vector< multi_arr<int,2> > ipdBaseTrans

extern

Referenced by atmdat_CHIANTI_readin(), atmdat_LAMDA_readin(), atmdat_STOUT_readin(), database_readin(), and trim_levels().

ipExtraLymanLinesHeLike

multi_arr<int,2> ipExtraLymanLinesHeLike

extern

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ipExtraLymanLinesJ05

multi_arr<int,2> ipExtraLymanLinesJ05

extern

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ipExtraLymanLinesJ15

multi_arr<int,2> ipExtraLymanLinesJ15

extern

Referenced by ContCreatePointers(), iso_allocate(), iso_assign_extralyman_levels(), iso_create(), IterStart(), lines(), lines_hydro(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineStuff().

ipFe2LevN

multi_arr<int,2> ipFe2LevN

extern

ipSatelliteLines

multi_arr<int,3> ipSatelliteLines

extern

lines forming from doubly excited states

Referenced by ContCreatePointers(), DoSatelliteLines(), iso_allocate(), iso_satellite(), iso_satellite_update(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineData().

lgHydroAlloc

bool lgHydroAlloc

extern

this will be set true once space is allocated for the HydroLines array. from then on any HYDROGENIC LEVELS command will be ignored, this is set to false in cddefines.c

Referenced by iso_create(), and ParseDatabaseISO().

lgLinesAdded

bool lgLinesAdded

extern

Referenced by TransitionProxy::AddLine2Stack(), and ContCreatePointers().

lgStatesAdded

bool lgStatesAdded

extern

Referenced by TransitionProxy::AddHiState(), TransitionProxy::AddLoState(), and ContCreatePointers().

nLevel1

long int nLevel1

extern

this is the number of level 1 lines, and is set in atmdat_readin by counter number of data lines in level1.dat

nSpecies

long int nSpecies

extern

Referenced by atmdat_readin(), ContCreatePointers(), ConvIterCheck(), CoolEvaluate(), CoolSum(), database_readin(), dBase_solve(), dBaseTrim(), dBaseUpdateCollCoeffs(), FindNeg(), FndLineHt(), IterStart(), lines(), lines_general(), PresTotCurrent(), PrtLinePres(), prtmet(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveDo(), SaveLineData(), SaveLineStuff(), states_nelemfill(), states_popfill(), states_propprint(), and TempChange().

NWINDDIM

const int NWINDDIM = 6744

number of level 2 lines, dim for WindLine array

nWindLine

long nWindLine

extern

this is set to 0 with no atom_level2 command, normally equal to NWINDDIM, definition is in cddefines.c

Referenced by atmdat_readin(), ContCreatePointers(), CoolDima(), CoolSum(), FindNeg(), FndLineHt(), lines(), lines_setup(), ParseDont(), PresTotCurrent(), PrtColumns(), PrtComment(), PrtLinePres(), prtmet(), read_level2_lines(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_OTS(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), SaveLineData(), and SaveLineStuff().

SatelliteLines

vector<vector<TransitionList> > SatelliteLines

extern

Referenced by ContCreatePointers(), DoSatelliteLines(), iso_allocate(), iso_satellite(), iso_satellite_update(), RT_diffuse(), RT_line_all(), RT_line_driving(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and SaveLineData().

StoutCollData

vector< StoutCollArray > StoutCollData

extern

Referenced by atmdat_STOUT_readin(), database_readin(), and StoutCollRate().

TauDummy

TransitionProxy::iterator TauDummy

extern

this is a dummy optical depth array for non-existant lines

TauLine2

TransitionList TauLine2

extern

pointers to element and ion, TauLine2[line number][pointer within vector]

Transitions

vector<vector<TransitionList> > Transitions

extern

main line arrays for hydrogenic ions

first dimension is atomic number
second dim is upper level
third dim is lower level
nta dim is set of pointers for quantities within line transfer arrays
in the forc translation, the upper level was too low by 1, since the
fortran was starting at 1. the lower dim was not changed by translation
since it started from ip1s = 0
any place where the third dim has -1 is probably a remnant from forc and is wrong

Referenced by iso_allocate().

UTALines

TransitionList UTALines

extern

the set of inner shell lines