save_species.cpp File Reference

#include "cddefines.h"
#include "taulines.h"
#include "radius.h"
#include "save.h"
#include "mole.h"
#include "mole_priv.h"
#include "generic_state.h"
#include "iterations.h"
#include "dense.h"
#include "prt.h"

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Classes
class	Field
class	RateCmp

Functions
STATIC void	SaveSpeciesLines (FILE *ioPUN, const vector< genericState > &speciesList)
STATIC void	SaveSpeciesOne (const vector< genericState > &SpeciesList, double(*job)(const genericState &), bool lgZonal, const char *chFmt, FILE *ioPUN)
STATIC void	SaveSpeciesHeader (const vector< genericState > &SpeciesList, const char *chJob, bool lgZonal, FILE *ioPUN, size_t maxLevels)
void	SaveSpecies (FILE *ioPUN, long int ipPun)
STATIC void	PrintShortZero (FILE *ioPUN, const char *chFmt, double arg)
STATIC void	SaveAllSpeciesLabelsLevels (FILE *ioPUN, const vector< genericState > &speciesList)
void	SaveSpeciesOptDep (const long int ipPun, const string &speciesLabel)
STATIC void	doHeader (FILE *punit, const Field &f)
STATIC void	doData (FILE *punit, const Field &f)
STATIC bool	isCatalystReactant (const mole_reaction &rate, int i)
STATIC bool	isCatalystProduct (const mole_reaction &rate, int i)
STATIC bool	isDestroyed (const mole_reaction &rate, int i)
STATIC bool	isCreated (const mole_reaction &rate, int i)
void	mole_save (FILE *punit, const char speciesname[], const char args[], bool lgHeader, bool lgData, bool lgCoef, double depth)
void	mole_dominant_rates (const vector< const molecule * > &debug_list, FILE *ioOut, bool lgPrintReagents, size_t NPRINT, double fprint)
void	mole_print_species_reactions (molecule *speciesToPrint)

Variables
const bool	lgRowPerZone = true

Function Documentation

doData()

STATIC void doData	(	FILE *	punit,
		const Field &	f )

References DEBUG_ENTRY, Field::fmt, fprintf(), STATIC, and Field::value().

Referenced by mole_save().

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doHeader()

STATIC void doHeader	(	FILE *	punit,
		const Field &	f )

References DEBUG_ENTRY, fprintf(), Field::label, and STATIC.

Referenced by mole_save().

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isCatalystProduct()

STATIC bool isCatalystProduct ( const mole_reaction & rate, int i )

inline

References NULL, mole_reaction::pvector, and STATIC.

Referenced by isCreated(), and mole_save().

isCatalystReactant()

STATIC bool isCatalystReactant ( const mole_reaction & rate, int i )

inline

References NULL, mole_reaction::rvector, and STATIC.

Referenced by isDestroyed(), and mole_save().

isCreated()

STATIC bool isCreated ( const mole_reaction & rate, int i )

inline

References isCatalystProduct(), NULL, mole_reaction::pvector_excit, and STATIC.

Referenced by mole_save().

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isDestroyed()

STATIC bool isDestroyed ( const mole_reaction & rate, int i )

inline

References isCatalystReactant(), NULL, mole_reaction::rvector_excit, and STATIC.

Referenced by mole_save().

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mole_dominant_rates()

void mole_dominant_rates	(	const vector< const molecule * > &	debug_list,
		FILE *	ioOut,
		bool	lgPrintReagents,
		size_t	NPRINT,
		double	fprint )

References fprintf(), mole_reaction::index, molecule::index, mole, mole_reaction::nproducts, mole_reaction::nreactants, NULL, mole_reaction::products, mole_reaction::pvector, mole_priv::reactab, mole_reaction::reactants, and mole_reaction::rvector.

Referenced by ConvBase(), and SaveDo().

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mole_print_species_reactions()

void mole_print_species_reactions

(

molecule *

speciesToPrint

)

References fprintf(), mole_reaction::index, molecule::index, ioQQQ, mole_reaction::label, molecule::label, mole, mole_reaction::nproducts, mole_reaction::nreactants, NULL, mole_reaction::products, mole_reaction::pvector, mole_priv::reactab, mole_reaction::reactants, and mole_reaction::rvector.

Referenced by lgElemsConserved(), and mole_system_error().

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mole_save()

void mole_save	(	FILE *	punit,
		const char	speciesname[],
		const char	args[],
		bool	lgHeader,
		bool	lgData,
		bool	lgCoef,
		double	depth )

References DEBUG_ENTRY, doData(), doHeader(), findspecies(), fprintf(), mole_reaction::index, molecule::index, isCatalystProduct(), isCatalystReactant(), isCreated(), isDestroyed(), mole_reaction::label, mole, mole_reaction::nproducts, mole_reaction::nreactants, null_mole, mole_reaction::products, mole_priv::reactab, and mole_reaction::reactants.

Referenced by ConvBase(), and SaveDo().

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PrintShortZero()

STATIC void PrintShortZero	(	FILE *	ioPUN,
		const char *	chFmt,
		double	arg )

References DEBUG_ENTRY, fprintf(), and STATIC.

Referenced by SaveSpeciesOne().

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SaveAllSpeciesLabelsLevels()

STATIC void SaveAllSpeciesLabelsLevels	(	FILE *	ioPUN,
		const vector< genericState > &	speciesList )

SaveAllSpeciesLabelsLevels – generate output of all species labels & levels

References chemical_to_spectral(), fprintf(), NULL, null_molezone, and STATIC.

Referenced by SaveSpeciesLines().

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SaveSpecies()

void SaveSpecies	(	FILE *	ioPUN,
		long int	ipPun )

SaveSpecies generate output for the save species command

Parameters

ioPUN	io unit for save
ipPun	arrayin save array

References ASSERT, cdEXIT, column(), DEBUG_ENTRY, density(), depart(), energy(), EXIT_FAILURE, fprintf(), ioQQQ, ipPun, levels(), molezone::levels, matchGeneric(), MAX2, mole, mole_global, NULL, null_molezone, save, SaveSpeciesHeader(), SaveSpeciesLines(), SaveSpeciesOne(), qList::size(), and TotalInsanity().

Referenced by SaveDo().

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SaveSpeciesHeader()

STATIC void SaveSpeciesHeader	(	const vector< genericState > &	SpeciesList,
		const char *	chJob,
		bool	lgZonal,
		FILE *	ioPUN,
		size_t	maxLevels )

References DEBUG_ENTRY, fprintf(), lgRowPerZone, and STATIC.

Referenced by SaveSpecies().

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SaveSpeciesLines()

STATIC void SaveSpeciesLines	(	FILE *	ioPUN,
		const vector< genericState > &	speciesList )

References chemical_to_spectral(), dense, fprintf(), ipNCOLLIDER, NULL, null_molezone, save, SaveAllSpeciesLabelsLevels(), and STATIC.

Referenced by SaveSpecies().

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SaveSpeciesOne()

STATIC void SaveSpeciesOne	(	const vector< genericState > &	SpeciesList,
		double(*	job )(const genericState &),
		bool	lgZonal,
		const char *	chFmt,
		FILE *	ioPUN )

References DEBUG_ENTRY, fprintf(), lgRowPerZone, PrintShortZero(), radius, and STATIC.

Referenced by SaveSpecies().

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SaveSpeciesOptDep()

void SaveSpeciesOptDep	(	const long int	ipPun,
		const string &	speciesLabel )

SaveSpeciesOptDep – generate output for 'save species optical depth'

Parameters

ipPun	array index in save array
speciesLabel	label to acquire species

References DEBUG_ENTRY, fprintf(), getSpeciesGeneric(), ioQQQ, ipPun, iterations, NULL, and save.

Referenced by SaveDo().

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Variable Documentation

lgRowPerZone

const bool lgRowPerZone = true

Referenced by SaveSpeciesHeader(), and SaveSpeciesOne().