cloudy: mole_priv.h File Reference

#include "count_ptr.h"
#include "container_classes.h"

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Data Structures
class	GroupMap

class	mole_reaction

Namespaces
	mole_priv

Macros
#define	MAXREACTANTS 3

#define	MAXPRODUCTS 4

Typedefs
typedef map< string, count_ptr < mole_reaction > >::iterator	mole_reaction_i

typedef map< string, count_ptr < mole_reaction > >::const_iterator	mole_reaction_ci

typedef map< string, count_ptr < molecule > >::iterator	molecule_i

typedef map< string, count_ptr < chem_element > >::iterator	chem_element_i

Enumerations
enum	udfastate { ABSENT, CORRECT, CONFLICT }

Functions
void	mole_eval_balance (long int n, double *b, bool lgJac, multi_arr< double, 2 > &c)

double	mole_solve (void)

void	mole_eval_sources (long int num_total)

realnum	mole_return_cached_species (const GroupMap &MoleMap)

double	frac_H2star_hminus ()

void	mole_update_rks (void)

Variables
map< string, count_ptr < molecule > >	mole_priv::spectab

map< string, count_ptr < mole_reaction > >	mole_priv::reactab

map< string, count_ptr < chem_element > >	mole_priv::elemtab

map< string, count_ptr < mole_reaction > >	mole_priv::functab

vector< molecule * >	groupspecies

Macro Definition Documentation

#define MAXPRODUCTS 4

Definition at line 46 of file mole_priv.h.

Referenced by compare_udfa(), parse_reaction(), and parse_udfa().

#define MAXREACTANTS 3

Definition at line 45 of file mole_priv.h.

Referenced by compare_udfa(), mole_eval_balance(), mole_eval_sources(), parse_reaction(), and parse_udfa().

Typedef Documentation

typedef map<string,count_ptr<chem_element> >::iterator chem_element_i

Definition at line 41 of file mole_priv.h.

typedef map<string,count_ptr<mole_reaction> >::const_iterator mole_reaction_ci

Definition at line 39 of file mole_priv.h.

typedef map<string,count_ptr<mole_reaction> >::iterator mole_reaction_i

Definition at line 38 of file mole_priv.h.

typedef map<string,count_ptr<molecule> >::iterator molecule_i

Definition at line 40 of file mole_priv.h.

Enumeration Type Documentation

Enumerator
ABSENT
CORRECT
CONFLICT

Definition at line 69 of file mole_priv.h.

Function Documentation

double frac_H2star_hminus ( )

Definition at line 699 of file mole_reactions.cpp.

References h2, t_hmi::H2_forms_hminus, t_hmi::H2star_forms_hminus, hmi, diatomics::lgEnabled, diatomics::lgEvaluated, t_hmi::lgH2_Chemistry_BigH2, and SDIV().

Referenced by mole_h_rate_diagnostics().

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void mole_eval_balance	(	long int	n,
		double *	b,
		bool	lgJac,
		multi_arr< double, 2 > &	c
	)

mole_eval_balance

Definition at line 36 of file mole_eval_balance.cpp.

References ASSERT, DEBUG_ENTRY, fprintf(), mole_reaction::index, molecule::index, ioQQQ, mole_reaction::label, lgNucleiConserved(), t_trace::lgTrace, t_trace::lgTraceMole, t_mole_global::list, MAXREACTANTS, mole, mole_global, mole_reaction::nproducts, mole_reaction::nreactants, t_mole_global::num_calc, mole_reaction::products, mole_reaction::pvector, mole_priv::reactab, mole_reaction::reactants, t_mole_local::reaction_rks, mole_reaction::rvector, t_mole_local::species, trace, and multi_arr< T, d, ALLOC, lgBC >::zero().

Referenced by mole_eval_dynamic_balance().

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void mole_eval_sources ( long int num_total )

realnum mole_return_cached_species ( const GroupMap & MoleMap )

Definition at line 935 of file mole_species.cpp.

References ASSERT, dense, deut, t_mole_local::elec, frac(), t_dense::gas_phase, lgElemsConserved(), t_mole_global::list, mole, MOLE_ACTIVE, mole_global, t_mole_global::num_calc, t_mole_global::num_total, SDIV(), t_mole_local::species, t_deuterium::updateXMolecules(), and t_dense::updateXMolecules().

Referenced by mole_solve().

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double mole_solve ( void )

mole_solve fills in matrix for heavy elements molecular routines

Definition at line 46 of file mole_solve.cpp.

References ASSERT, BIGFLOAT, check_co_ion_converge(), conv, DEBUG_ENTRY, dense, t_dense::eden, fixit, fnzone, fprintf(), funjac(), get_ptr(), groupspecies, t_hmi::H2_frac_abund_set, hmi, ionbal, t_conv::IonizErrorAllowed, ioQQQ, ipHYDROGEN, lgElemsConserved(), t_trace::lgTrace, mole, mole_global, mole_h_fixup(), mole_return_cached_species(), newton_step(), nuclide_list, t_mole_global::num_calc, t_mole_global::num_compacted, nzone, phycon, t_ionbal::RateIonizTot(), t_ionbal::RateRecomTot, t_conv::register_(), t_conv::setConvIonizFail(), t_mole_local::sink, SMALLABUND, t_mole_local::source, t_mole_local::species, t_phycon::te, trace, and t_dense::xIonDense.

Referenced by mole_drive().

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void mole_update_rks ( void )

mole_update_rks update rate coefficients, only temp part

Definition at line 3008 of file mole_reactions.cpp.

References mole_reaction::a, DEBUG_ENTRY, fprintf(), mole_reaction::index, ioQQQ, mole_reaction::label, mole, mole_h2_grain_form(), mole_h_reactions(), mole_priv::reactab, t_mole_local::reaction_rks, and mole_reaction::rk().

Referenced by mole_drive().

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Variable Documentation

vector<molecule *> groupspecies

Definition at line 56 of file mole_species.cpp.

Referenced by funjac(), grouped_elems(), mole_make_groups(), mole_solve(), mole_system_error(), newton_step(), GroupMap::setup(), and GroupMap::updateMolecules().